View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_20 (Length: 325)
Name: NF13561_low_20
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 42770602 - 42770848
Alignment:
| Q |
19 |
cagccatgtgaccttgaatgttcttaaaaattttcttctgctttctcatcttcagccgcagaaccttgtggaaccgcctcaaagatttcacttttagcca |
118 |
Q |
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| T |
42770602 |
cagccatgtgaccttgaatgttcttaaaaattttcttctgctttctcatcttcagccgcagaaccttgtggaaccgcctcaaagatttcactttcagcca |
42770701 |
T |
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| Q |
119 |
taccttatttaacattcttagagctttcttctccgctttctcaccttcaaccacaaaatcttgtgaaacattctaagagatttcaccttcagccacataa |
218 |
Q |
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| T |
42770702 |
taccttatttaacattcttagagctttcttctccgctttctcaccttcaaccacaaaatcttgtgaaacattctaagagatttcaccttcagccacataa |
42770801 |
T |
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| Q |
219 |
gcttcttgaatgttcttcttcgactttctcaccttcagctgtataac |
265 |
Q |
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| T |
42770802 |
gtttcttgaatgttcttcttcgactttctcaccttcagctgtataac |
42770848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 42772437 - 42772323
Alignment:
| Q |
59 |
ctttctcatcttcagccgcagaaccttgtggaaccgcctcaaagatttcacttttagcca---taccttatttaacattcttagagctttcttc-tccgc |
154 |
Q |
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| T |
42772437 |
ctttctcaccttcggccgcaaaaccttctggaaccgtctcaaagatttcaccttcagccacggaaccttctttaacgttcttagagttttcttcttccgc |
42772338 |
T |
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| Q |
155 |
tttctcaccttcaac |
169 |
Q |
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| T |
42772337 |
tttcccaccttcaac |
42772323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 42770219 - 42770110
Alignment:
| Q |
120 |
accttatttaacattcttagagctttcttct-ccgctttctcaccttcaaccacaaaatcttgtgaaacattctaagagatttcaccttcagccacataa |
218 |
Q |
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| T |
42770219 |
accttcttgaacgttcctagagttttcttcttcctctttctcaccttcaaccgcagaaccttttggaaccttcttagagatttcaccttcagccacaaaa |
42770120 |
T |
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| Q |
219 |
gcttcttgaa |
228 |
Q |
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| T |
42770119 |
ccttcttgaa |
42770110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 42772977 - 42773014
Alignment:
| Q |
198 |
atttcaccttcagccacataagcttcttgaatgttctt |
235 |
Q |
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| T |
42772977 |
atttcaccttcagccacaaaagcttcttgaatgttctt |
42773014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 42772480 - 42772425
Alignment:
| Q |
199 |
tttcaccttcagccacataagcttcttgaatgttcttcttcgactttctcaccttc |
254 |
Q |
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| T |
42772480 |
tttcaccttcagccacagaaccttcttgagttttcttcttcctctttctcaccttc |
42772425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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