View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13561_low_22 (Length: 283)
Name: NF13561_low_22
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 55928511 - 55928242
Alignment:
| Q |
1 |
aaacaatgtcagtaaagaaaaaaggacagaaaccttaagcaaacaactggcaagtaagttgatcatgaacagacgagtgtgctattgagcgtgacacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55928511 |
aaacaatgtcagtaaagaaaaaaggacagaaaccttaagcaaacaactggcaagtaagttgatcatgaacagacgagtgtgctattgagcgtgacacaaa |
55928412 |
T |
|
| Q |
101 |
tcaatttatgtgtcgcctcatgaataccaaattttagctagatatgaaaaacaaagacaaaatccagctaataggccacaagttttcaatgagaatgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55928411 |
tcaatttatgtgtcgcctcatgaataccaaattttagctagatatgaaaaacaaagacaaaatccagctaataggccacaagttttcaatgagaatgaca |
55928312 |
T |
|
| Q |
201 |
aaagaggaatgaattatgatgcaggtttctccatcaatgatgtatttatcaattaagtggcatatatatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55928311 |
aaagaggaatgaattatgatgcaggtttctccatcaatgatgtatttatcaattaagtggcatatatatg |
55928242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 34584484 - 34584291
Alignment:
| Q |
34 |
cttaagcaaacaactggcaagtaagttgatcatgaacagacgagtgtgctattgagcgtgacacaaatcaatttatgtgtcgcctcatgaataccaaatt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
34584484 |
cttaagcaaacaactggcaagtaagttgatcatgaagagacgggtgtactaccgagcgtgacacgaatcaatttatgtgtcacctcatgaataccaatgt |
34584385 |
T |
|
| Q |
134 |
ttagctagatatgaaaaacaaagacaaaatccagctaataggccacaagttttcaatgagaatgacaaaagaggaatgaattatgatgcaggtt |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||| |||| |||| ||||| ||||||| |
|
|
| T |
34584384 |
ttagctagatatgaaaaacaaaaacaaaatccagctaataagccacaagctttcaatgagaatgaccaaaaaggattgaaatatgacgcaggtt |
34584291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University