View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_3 (Length: 715)

Name: NF13561_low_3
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_3
NF13561_low_3
[»] chr1 (4 HSPs)
chr1 (18-479)||(22022593-22023052)
chr1 (498-588)||(38236310-38236401)
chr1 (498-536)||(51387129-51387167)
chr1 (498-531)||(10008375-10008408)
[»] chr7 (2 HSPs)
chr7 (498-535)||(7853691-7853728)
chr7 (498-535)||(28226134-28226171)
[»] chr5 (2 HSPs)
chr5 (498-588)||(16222654-16222745)
chr5 (498-536)||(40951486-40951524)
[»] chr8 (1 HSPs)
chr8 (498-536)||(16367878-16367916)
[»] chr4 (3 HSPs)
chr4 (498-536)||(17558825-17558863)
chr4 (498-535)||(9199866-9199903)
chr4 (498-535)||(9201405-9201442)
[»] chr3 (2 HSPs)
chr3 (498-536)||(44708227-44708265)
chr3 (498-535)||(5561553-5561590)


Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 22022593 - 22023052
Alignment:
Q  18 acttcggttgttataaaggacattagaatttagattagtgaagtcatgtcaatatcaactactctaaaaatcaatttcaccattctatttttatattttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22022593 acttcggttgttataaaggacattagaatttagattagtgaagtcatgtcaatatcaactactttaaaaatcaatttcaccattctatttttatattttc 22022692  T
Q  118 aacnnnnnnnnnnncagtttacgtaactaatatatggtaatgttatagtctaagaaagacttcaaaacgtgttatctgcaaagttactcttactagactt 217  Q
    |||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22022693 aactaaaaaaaaa-cagtttacgtaactaatatatggtaatgttatagtctaagaaagacttcaaaacgtgttatctgcaaagttactct-actagactt 22022790  T
Q  218 tagtattaggtagggtttagttatccaaatgaacccatgcctcttgggaatgctttcttatgggaaaagtaacaaaagggaaaatatcaatttcattcaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022791 tagtattaggtagggtttagttatccaaatgaacccatgcctcttgggaatgctttcttatgggaaaagtaacaaaagggaaaatatcaatttcattcaa 22022890  T
Q  318 aattatgcgcattaccatgttcaatcctcaatatgtttggtactttatcttgtttatttactaaaataagataaattttgtctagataaacgacttgaat 417  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22022891 aattatgcgcattaccaagttcaatcctccatatgtttggtaccttatcttgtttatttactaaaataagataaattttgtctagataaacgacttgact 22022990  T
Q  418 tattaaagcaaaagacataaacggttgttcctctacttgcttccaagacccaggggatgggt 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22022991 tattaaagcaaaagacataaacggttgttcctctacttgcttccaagacccaagggatgggt 22023052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 588
Target Start/End: Original strand, 38236310 - 38236401
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatatggct-aaaacattaactgaaattcattgtcatatgtccgacgaaattaataca 588  Q
    ||||||||||||||||||||    ||||||||||||||| ||| |||||||||  |||| |||||| | |||||||  ||| ||||||||||    
T  38236310 actagatcgtctacccgtgcggcagcacgggtcatatatagctaaaaacattagttgaacttcattctaatatgtcaaacgtaattaataca 38236401  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 51387129 - 51387167
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatat 536  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatat 51387167  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 10008375 - 10008408
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtca 531  Q
    |||||||||||||||||||||| |||||||||||    
T  10008375 actagatcgtctacccgtgctaccgcacgggtca 10008408  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 7853728 - 7853691
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatata 535  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7853728 actagatcgtctacccgtgctaccgcacgggtcatata 7853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 28226171 - 28226134
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatata 535  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  28226171 actagatcgtctacctgtgctaccgcacgggtcatata 28226134  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 588
Target Start/End: Complemental strand, 16222745 - 16222654
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatatggct-aaaacattaactgaaattcattgtcatatgtccgacgaaattaataca 588  Q
    |||||||||||||||||||||  |||||  ||||||||| ||| |||||||||  |||| |||||| | |||||||  ||| ||||||||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaacttcattctaatatgtcaaacgtaattaataca 16222654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 40951524 - 40951486
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatat 536  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatat 40951486  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 16367916 - 16367878
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatat 536  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  16367916 actagatcgtctacccgtgctgccgcacgggtcatatat 16367878  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 17558825 - 17558863
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatat 536  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  17558825 actagatcgtctacccgtgctgccgcacgggtcatatat 17558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 9199866 - 9199903
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatata 535  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9199866 actagatcgtctacccgtgctgccgcacgggtcatata 9199903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 9201405 - 9201442
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatata 535  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9201405 actagatcgtctacccgtgctgccgcacgggtcatata 9201442  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 44708227 - 44708265
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatatat 536  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatat 44708265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 5561553 - 5561590
Alignment:
Q  498 actagatcgtctacccgtgctaacgcacgggtcatata 535  Q
    |||||||||||||||||||||  |||||||||||||||    
T  5561553 actagatcgtctacccgtgctgccgcacgggtcatata 5561590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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