View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13561_low_31 (Length: 241)
Name: NF13561_low_31
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 7834800 - 7834947
Alignment:
| Q |
76 |
catggctatacaattattaaaagtgaggctctttgtgttggtaatcattatatcccaccaaagttcttgaatcataaaataatttcaccggaaattactt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7834800 |
catggctatacaattattaaaagtgaggctctttgtgttggtaatcattatatcccaccaaagttcttgaatcataaaataatttcaccggaaattactt |
7834899 |
T |
|
| Q |
176 |
cttttaaaagttgtattttgaagtttttataaaattatattgtgtcaaat |
225 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
7834900 |
ctttttaaagttgtgttttgaagtttttataaaat--tattgtgtcaaat |
7834947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University