View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_34 (Length: 238)

Name: NF13561_low_34
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_34
NF13561_low_34
[»] chr8 (3 HSPs)
chr8 (131-223)||(4509741-4509833)
chr8 (1-88)||(4509610-4509697)
chr8 (141-216)||(43209070-43209145)
[»] chr2 (1 HSPs)
chr2 (131-223)||(43434665-43434757)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 4509741 - 4509833
Alignment:
Q  131 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4509741 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 4509833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4509610 - 4509697
Alignment:
Q  1 taatttcgtttcgagtagattattttaaaattttgttaatttcatggaacgaattgtctcattccaaaagactaaagtgatgattcaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4509610 taatttcgtttcgagtagattattttaaaattttgttaatttcatggaacgaattgtctcattccaaaagactaaagtgatgattcaa 4509697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 43209145 - 43209070
Alignment:
Q  141 ctttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtgg 216  Q
    ||||| |||| |||||||| | ||| ||||| || || ||||||||||||||||||||||| || || ||||||||    
T  43209145 ctttgctgagggatccacaatacaacaaagggcttgctttcaccgagaaagagagggatgcgcattatttgcgtgg 43209070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 43434757 - 43434665
Alignment:
Q  131 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 223  Q
    ||||| ||||| |||||| |||||||||| ||||| |||||  |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43434757 agtggttatacattgttgcgagatccacacttcaacaaagggttggccttcactgaaaaagagagggatgcacactacttgcgtggtcttctt 43434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University