View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_39 (Length: 231)
Name: NF13561_low_39
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_39 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 10252994 - 10252898
Alignment:
| Q |
120 |
atgattagaaaaactaacaatcctattcatcctgatgggataaagcattgagattgactcaagcctcatcatgttgaacaatgtctccactagtgct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10252994 |
atgattagaaaaactaacaatcctattcatcctgatgggataaagcattgagattgactcaagcctcatcatgttgaacaatgtctccactagtgct |
10252898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10253154 - 10253031
Alignment:
| Q |
1 |
cctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatgagct-----------ttccacaattcaac |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
10253154 |
cctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatgagcttcaatatgttcttctacaattcaac |
10253055 |
T |
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| Q |
90 |
gttgaagatcttatccgtgaacct |
113 |
Q |
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|||||||||||||||||||||||| |
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| T |
10253054 |
gttgaagatcttatccgtgaacct |
10253031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 10265612 - 10265541
Alignment:
| Q |
123 |
attagaaaaactaacaatcctattcatcctgatgggataaagcattgagattgactcaagcctcatcatgtt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265612 |
attagaaaaactaacaatcctattcatcctgatgggataaagcattgagattgactcaagcctcatcatgtt |
10265541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 10244459 - 10244412
Alignment:
| Q |
166 |
attgagattgactcaagcctcatcatgttgaacaatgtctccactagt |
213 |
Q |
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| T |
10244459 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagt |
10244412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 10255071 - 10255024
Alignment:
| Q |
166 |
attgagattgactcaagcctcatcatgttgaacaatgtctccactagt |
213 |
Q |
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|||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
10255071 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagt |
10255024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 10241846 - 10241797
Alignment:
| Q |
23 |
ctcactccttccatgcaaccccatcttgattactctctcaccaaacatga |
72 |
Q |
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| T |
10241846 |
ctcacttcttccatgcaaccctctcttgaatactctcccaccaaacatga |
10241797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 10241250 - 10241218
Alignment:
| Q |
159 |
ataaagcattgagattgactcaagcctcatcat |
191 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
10241250 |
ataaagcattgagattgactcaagcttcatcat |
10241218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8295427 - 8295357
Alignment:
| Q |
1 |
cctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatga |
72 |
Q |
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| T |
8295427 |
cctcattcccacacttggtccactaactccttccatgcaa-tccatcttgaacactcttccaccaaacatga |
8295357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33256328 - 33256367
Alignment:
| Q |
1 |
cctcattcccacacttggtccactcactccttccatgcaa |
40 |
Q |
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| T |
33256328 |
cctcattcccacacttggtccactaactccttccatgcaa |
33256367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 446 - 485
Alignment:
| Q |
1 |
cctcattcccacacttggtccactcactccttccatgcaa |
40 |
Q |
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| T |
446 |
cctcattcccacacttggtccactaactccttccatgcaa |
485 |
T |
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