View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_5 (Length: 686)

Name: NF13561_low_5
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_5
NF13561_low_5
[»] chr4 (1 HSPs)
chr4 (529-671)||(56165040-56165182)
[»] chr2 (3 HSPs)
chr2 (82-323)||(44253577-44253813)
chr2 (82-135)||(44259211-44259264)
chr2 (206-327)||(6688350-6688471)
[»] chr3 (9 HSPs)
chr3 (126-327)||(53060139-53060340)
chr3 (159-374)||(53970936-53971151)
chr3 (119-327)||(53063119-53063329)
chr3 (122-327)||(53984604-53984809)
chr3 (113-237)||(53970561-53970685)
chr3 (119-327)||(53072160-53072370)
chr3 (117-224)||(53340550-53340657)
chr3 (438-537)||(53984925-53985024)
chr3 (438-534)||(53971218-53971315)
[»] chr1 (1 HSPs)
chr1 (117-327)||(16162307-16162517)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 529 - 671
Target Start/End: Complemental strand, 56165182 - 56165040
Alignment:
Q  529 atccacttcttacccttaaaattacaaacaaaacattagaatccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt 628  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56165182 atccacttcttacccttaaaattacaaacaaaacattagaaaccataccgggttggttttaatatttacatagacaaaatattacaaatcgaacttagtt 56165083  T
Q  629 catgccatatttagatgcaaaatctctaccctagaaagaaagt 671  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  56165082 catgccatatttagacgcaaaatctctaccctagaaagaaagt 56165040  T

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Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 82 - 323
Target Start/End: Complemental strand, 44253813 - 44253577
Alignment:
Q  82 acatataaaacttggaattataaatatattctagtcctcatcaatc-aaatataagtttacagccccttggacacacagctaatttccgtaatatttcgt 180  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||  |||||||    
T  44253813 acatataaaaattggaattataaatatattatagtcttcatcaatcaaaatataagtttacagccccttgggcacacagataatttccttagcatttcgt 44253714  T
Q  181 gct----ttgcatttaaatttatggaagaggcactgcgaattgtcatgctacgtaatacttttgcatgtttcataacatactctgcacattgaaggtcac 276  Q
    | |    ||||||| |||| |||| || | ||||||||||||||||||           |||||  | || |||||||||||||||| ||||||| ||||    
T  44253713 gttttgcttgcattcaaatctatgaaacaagcactgcgaattgtcatg----------gttttgagttttgcataacatactctgcaaattgaagctcac 44253624  T
Q  277 actttcttcctctaaaaccaataaacaagcaagttcttagctgagat 323  Q
    ||||||| |||||| ||||  ||||||||||| ||||||||||||||    
T  44253623 actttctgcctctacaacctgtaaacaagcaaattcttagctgagat 44253577  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 44259264 - 44259211
Alignment:
Q  82 acatataaaacttggaattataaatatattctagtcctcatcaatcaaatataa 135  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  44259264 acatataaaacttggatttataaatatattatagtcctcatcaatcaaatataa 44259211  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 6688471 - 6688350
Alignment:
Q  206 ggcactgcgaattgtcatgctacgtaatacttttgcatgtttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaag 305  Q
    ||||||||||||| ||||| ||| ||||||||||| ||  | ||||||||| |||||| ||||||| || ||| || | |||||| ||    ||||||||    
T  6688471 ggcactgcgaattctcatgttacttaatacttttgaattgtgcataacatattctgcaaattgaagctcgcaccttttccctctataattcttaaacaag 6688372  T
Q  306 caagttcttagctgagatgaaa 327  Q
    |||||| | |||||||||||||    
T  6688371 caagttttgagctgagatgaaa 6688350  T

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Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 126 - 327
Target Start/End: Complemental strand, 53060340 - 53060139
Alignment:
Q  126 tcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaattgtcatgc 225  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||   || |||||||||||||| ||||||| | |||||| ||||| |||||     
T  53060340 tcaaatataagtttacagccccttggacacacagataatttctgtaacatccggtactttgcatttaaatctatggaacaagcactgtgaattatcatgt 53060241  T
Q  226 tacgtaatacttttgcatgtttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttagctgagatga 325  Q
    ||| ||||||||||| |     ||||||||| |||||| ||||||| || |||||| | |||||| ||    |||||||| ||||| | |||||||||||    
T  53060240 tacataatacttttgaactgcgcataacatattctgcaaattgaagctcgcactttttgcctctataattcttaaacaagtaagttttgagctgagatga 53060141  T
Q  326 aa 327  Q
    ||    
T  53060140 aa 53060139  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 374
Target Start/End: Original strand, 53970936 - 53971151
Alignment:
Q  159 gctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaattgtcatgctacgtaatacttttgcatgtttcataacatact 258  Q
    |||||||||  ||| |||| |||||||||  |||||| |||||||   |||||| |||||||||||  |||||||||||||| || || |||||||||||    
T  53970936 gctaatttctttaacatttggtgctttgcggttaaatctatggaacgcgcactgtgaattgtcatggcacgtaatacttttgaattttgcataacatact 53971035  T
Q  259 ctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttagctgagatgaaaaacctttcggaacagtatgtggttctggcca 358  Q
     |||| ||| ||| |||| ||| |||||| || |  |  ||||||| |||||||||||||||||||||| || | |||||||| | ||||| ||  ||||    
T  53971036 atgcaaattcaagctcactcttccttcctttacagtctttaaacaaacaagttcttagctgagatgaaatacatgtcggaacattttgtgggtcctgcca 53971135  T
Q  359 attgtactcataaatt 374  Q
    ||||| ||||||||||    
T  53971136 attgtcctcataaatt 53971151  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 327
Target Start/End: Complemental strand, 53063329 - 53063119
Alignment:
Q  119 tcatcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaatt 218  Q
    |||||| ||||||||||||||||| ||||||||| ||| || ||||||| |||| || | |||||| ||| |||||| ||||||| | |||||| |||||    
T  53063329 tcatcattcaaatataagtttacatccccttggatacagagataatttctgtaacatctggtgcttggcagttaaatctatggaacaagcactgtgaatt 53063230  T
Q  219 gtcatgctacgtaatacttttgca-tg-tttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttag 316  Q
    |||||| ||| ||||||||||| | ||    ||| ||||| |||||| ||||||| || |||||| | |||||| ||    |||||||||||||| | ||    
T  53063229 gtcatgttacttaatacttttgaactgcacgcatgacatattctgcaaattgaagctcgcactttttgcctctataattcttaaacaagcaagttttgag 53063130  T
Q  317 ctgagatgaaa 327  Q
    |||||||||||    
T  53063129 ctgagatgaaa 53063119  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 122 - 327
Target Start/End: Original strand, 53984604 - 53984809
Alignment:
Q  122 tcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaattgtc 221  Q
    |||||||||||| | |||||| | ||| || | | | |||||||||  ||| |||  |||||||||| |||||| ||||||| | |||||| | ||||||    
T  53984604 tcaatcaaatatcaatttacatctcctagggctctcggctaatttctttaacattctgtgctttgcagttaaatctatggaacacgcactgtggattgtc 53984703  T
Q  222 atgctacgtaatacttttgcatgtttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttagctgag 321  Q
    ||| ||| ||||||||| | || || |||||||||||||||| |||| || |||| |||  | ||| || ||||  ||||||| |||||||||| |||||    
T  53984704 atggtacttaatactttcgaattttgcataacatactctgcaaattgtagctcactcttcatgcctttacaacctttaaacaaacaagttcttaactgag 53984803  T
Q  322 atgaaa 327  Q
    ||||||    
T  53984804 atgaaa 53984809  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 53970561 - 53970685
Alignment:
Q  113 tagtcctcatcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactg 212  Q
    ||||| |||||||||||||||||||| ||| |||||||| ||||| | ||||||| |||| ||   || ||||||||||| || ||||||| ||||||||    
T  53970561 tagtcttcatcaatcaaatataagttcacatccccttgggcacactgataatttctgtaacatacggtactttgcatttacatgtatggaacaggcactg 53970660  T
Q  213 cgaattgtcatgctacgtaatactt 237  Q
     ||||||||||  ||| ||||||||    
T  53970661 tgaattgtcatagtacataatactt 53970685  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 327
Target Start/End: Complemental strand, 53072370 - 53072160
Alignment:
Q  119 tcatcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaatt 218  Q
    |||||| ||||||||||||||||| ||||||||| ||| || | ||||| |||| || | ||| || |||||||||| ||||||| | |||||| |||||    
T  53072370 tcatcattcaaatataagtttacatccccttggatacaaagatgatttctgtaacatctggtgtttggcatttaaatctatggaacaagcactgtgaatt 53072271  T
Q  219 gtcatgctacgtaatacttttgca-tg-tttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttag 316  Q
     ||||| ||| ||||||||||| | ||    ||| ||||| |||||| ||||||| || |||||| | |||||| ||    |||||||||||||| | ||    
T  53072270 atcatgttacttaatacttttgaactgcgcgcatgacatattctgcaaattgaagctcgcactttttgcctctataattcttaaacaagcaagttttgag 53072171  T
Q  317 ctgagatgaaa 327  Q
    |||||||||||    
T  53072170 ctgagatgaaa 53072160  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 53340550 - 53340657
Alignment:
Q  117 cctcatcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaa 216  Q
    |||| ||| ||||||||||| ||||| |||||| |||||| ||  |||||| |||| || | || |||||||||||||| | ||||| |||||||| |||    
T  53340550 cctcgtcattcaaatataagcttacatccccttagacacaaagacaatttctgtaacatctggtactttgcatttaaatatgtggaacaggcactgtgaa 53340649  T
Q  217 ttgtcatg 224  Q
    ||||||||    
T  53340650 ttgtcatg 53340657  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 438 - 537
Target Start/End: Original strand, 53984925 - 53985024
Alignment:
Q  438 taaattaaatcattaaattatcctaaacatatgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccacttc 537  Q
    ||||||||||| | |||||||||| | |||||   | ||||||| ||||||||||||||| || |||||| | |||||||||||  ||||||||||||||    
T  53984925 taaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc 53985024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 53971218 - 53971315
Alignment:
Q  438 taaattaaatcattaaattatcctaaacata-tgcaatacctgattaatggtaagatgttgtagattgggagtgtgttgaagcactcctagcatccac 534  Q
    ||||||||||||| |||||||||||| |||| |   ||||||||| ||||||||||||||| || || ||| | ||||  |||||  |||||||||||    
T  53971218 taaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatgttagagcacgtctagcatccac 53971315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 117 - 327
Target Start/End: Original strand, 16162307 - 16162517
Alignment:
Q  117 cctcatcaatcaaatataagtttacagccccttggacacacagctaatttccgtaatatttcgtgctttgcatttaaatttatggaagaggcactgcgaa 216  Q
    ||||||||||||||||| ||||||||| |||||   |||| |||||||||| |||| |||| || |||  |||||||||  |||||| |  ||||  |||    
T  16162307 cctcatcaatcaaatatgagtttacaggcccttccgcacatagctaatttctgtaacatttggtacttaccatttaaatcgatggaacatacactatgaa 16162406  T
Q  217 ttgtcatgctacgtaatacttttgcatgtttcataacatactctgcacattgaaggtcacactttcttcctctaaaaccaataaacaagcaagttcttag 316  Q
    |||||||| |||  ||| ||||||  | || ||| ||||| | |||| ||||||  |||  |||||| ||||||||| |  |||||||||||||| | ||    
T  16162407 ttgtcatggtacaaaatgcttttgagttttgcattacatattttgcaaattgaatctcattctttctgcctctaaaatctctaaacaagcaagttttgag 16162506  T
Q  317 ctgagatgaaa 327  Q
    |||||||||||    
T  16162507 ctgagatgaaa 16162517  T

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