View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_6 (Length: 667)
Name: NF13561_low_6
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Complemental strand, 50979952 - 50979441
Alignment:
| Q |
8 |
ggacatcatcaaaattgagttaaaaagacatcaatgcagaaataaagataacaagaaaagtaaataaatgctgacatgaataaatgtatacaatgatagg |
107 |
Q |
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| T |
50979952 |
ggacatcagcaaaattgagttaaaaagacatcaatgcagaaataa-gataacaagaaaagtaaataaatgctgacatgaataaatgtatacaatgatagg |
50979854 |
T |
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| Q |
108 |
agtttagaaaattttaaacaa-gaacnnnnnnnggacaagcttaagtttatgtatgattctcaaatggacatcctcttcttcctgaggagtcatatcact |
206 |
Q |
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| T |
50979853 |
agtttagaaaattttaaacaaagaacaaaaaaaggacaagcttaagtttatgtatgattctcaaatggacatcctcttcttcctgaggagtcatatcact |
50979754 |
T |
|
| Q |
207 |
cttgagatcttgataccggagtatctgttccggggtcattccttaattttgagatagtgtgctgcctgaaaaaccagataagccaaatgataagacaata |
306 |
Q |
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| T |
50979753 |
cttgagatcttgataccggagtatctgttccggggtcattccttaattttaagatagtgtgctgcctgaaaaaccaga------------taagacaata |
50979666 |
T |
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| Q |
307 |
taaaaggaaaatttcaaggcataaaacgtaccctnnnnnnnttggttatcctctatagggttctagcttatatgctgcaatagcattaatttagcttgct |
406 |
Q |
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| T |
50979665 |
taaaaggaaaatttcaaggcataaaacgtaccctggggg----ggttatcctctatagggttctagcttatatgctgcaatagcattaatttagcttgct |
50979570 |
T |
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| Q |
407 |
aatactcatccatattccttaaacagggcaagaaatgtccaaactcaagcctagctattaagtaaatatcaatatcttccagattctaactgttcaacta |
506 |
Q |
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| T |
50979569 |
agtactcatccttattccttaaacagggcaagaaatgtccaaactcaagcctagctattaagtaaatatcaatatcttccagattctaactgttcaacta |
50979470 |
T |
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| Q |
507 |
tgtggttaatgaagttcaattaaggttaa |
535 |
Q |
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| T |
50979469 |
tgtggttaatgaagttcaattaaggttaa |
50979441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 533 - 651
Target Start/End: Complemental strand, 50978260 - 50978142
Alignment:
| Q |
533 |
taaattgatcaggggtattcgagttctgaatttcaagcctcccttattaaccttataggtcaactccgaatttccaattccccttgctcataagaaaagg |
632 |
Q |
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| T |
50978260 |
taaattgatcaggggtattcgagttctgaatttcaagcctcccttattaaccttataggtcaactccgaatttccaattccccttgctcataagaaaagg |
50978161 |
T |
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| Q |
633 |
agggttaacaccaaaagac |
651 |
Q |
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| T |
50978160 |
agggttaacaccaaaagac |
50978142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 15855865 - 15855804
Alignment:
| Q |
250 |
taattttgagatagtgtgctgcctgaaaaaccagataagccaaatgataagacaatataaaa |
311 |
Q |
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| T |
15855865 |
taattttgagatagtgtgctgcctgaaaaaccagtgaagccaatttatatgacaatataaaa |
15855804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 50964575 - 50964504
Alignment:
| Q |
178 |
tcctcttcttcctgaggagtcatatcactcttgagatcttgataccggagtatctgttccggggtcattcct |
249 |
Q |
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| T |
50964575 |
tcctcttcttcctgaggagtcatatcattcttgagattgtaataccggtgtatcttttctggggtctttcct |
50964504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 50948400 - 50948347
Alignment:
| Q |
250 |
taattttgagatagtgtgctgcctgaaaaaccaga-taagccaaatgataagaca |
303 |
Q |
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| T |
50948400 |
taattttgagatagtgtgctgcctg-aaaaccagagaaagccaaatgataagaca |
50948347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 33631681 - 33631627
Alignment:
| Q |
250 |
taattttgagatagtgtgctgcctgaaaaaccaga-taagccaaatgataagaca |
303 |
Q |
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| T |
33631681 |
taattttgagatagtgtgctgcctgaaaaaccagagaaagtcaaatgataagaca |
33631627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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