View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_7 (Length: 646)
Name: NF13561_low_7
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 3151865 - 3151251
Alignment:
| Q |
19 |
ttcagatggtttctctccatttccaaattcaaattttttgattgctttggtaaaatttatcaacaaattgattcttctttaagattaaatctgtcaaagg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151865 |
ttcagatggtttctctccatttccaaattcaaattttttgattgctttggtaaaatttatcaacaaattgattcttctttaagattaaatctgtcaaagg |
3151766 |
T |
|
| Q |
119 |
ggagtttgagaacaatgataatttgagaagatcaactacctacaaaagcaagagatgaaacatcaaatgacaaggnnnnnnnncaaaatcacagattata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3151765 |
ggagtttgagaacaatgataatttgagaagatcaactacctacaaaagcaagagatgaaacatcaaatgacaaggaaaaaaaacaaaatcacagattata |
3151666 |
T |
|
| Q |
219 |
tagaagatagaaaaacatacctctttcttgcttatttccacagtttgttcgacaatagtatcattggtatcaattccaagcttctgatgtagatgtacaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3151665 |
tagaagatagaaaaacatacctctttcttgcttatttccacagtttgttcgacaatagtgtcattggtatcaattccaagcttctgatgtagatgtacaa |
3151566 |
T |
|
| Q |
319 |
ctgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactcaaatgttctggagc |
418 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3151565 |
ctgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactcagatgttctggagc |
3151466 |
T |
|
| Q |
419 |
tacatctttgtccagtattccaccacaatagcatttttgattcctcatagtgctcaaaagattctcactttctcttctagtacactcccaatcactacag |
518 |
Q |
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|||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
3151465 |
cacatctttgtccagtactctaccacaataacatttttgattcctcatagtgctcaaaagactcccactttctcttctagtacactcccaatcactacag |
3151366 |
T |
|
| Q |
519 |
aagaagtactccattggtgtatcatcaatgttcagtttcatctgctggaaataaaattccgtggagttttcttggctgcagcagcatttctttgcatgcc |
618 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3151365 |
aagaagtactcaattggtgtgtcatcaatgtttagtttcatctgctggaaataaatttccgtggag-tttcttggctgcagcagcatttctttgcatgcc |
3151267 |
T |
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| Q |
619 |
tgtgaccatagatatt |
634 |
Q |
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|||||||||||||||| |
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| T |
3151266 |
tgtgaccatagatatt |
3151251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 21194788 - 21194706
Alignment:
| Q |
297 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
379 |
Q |
| |
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| T |
21194788 |
agcttttgaagtagttgtataactgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttc |
21194706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 21200041 - 21199931
Alignment:
| Q |
297 |
agcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttc |
396 |
Q |
| |
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||||| ||| |||| |||| |||||| | |||||||||||||||||| || ||||||| ||||| ||||| | ||||||||| | |||||| || ||| |
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| T |
21200041 |
agcttgtgaagtagttgtataactgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaaccgcttc |
21199942 |
T |
|
| Q |
397 |
ctaaactcaaa |
407 |
Q |
| |
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|||| |||||| |
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| T |
21199941 |
ctaagctcaaa |
21199931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 407
Target Start/End: Complemental strand, 24284554 - 24284442
Alignment:
| Q |
295 |
caagcttctgatgtagatgtacaactgttgccaaaacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatt |
394 |
Q |
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||||||| ||| |||| ||| ||||||| | |||||||||||||||||| | |||| || ||||| ||||| || || ||||| | | |||||||||| |
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| T |
24284554 |
caagcttttgaagtagtggtataactgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatt |
24284455 |
T |
|
| Q |
395 |
tcctaaactcaaa |
407 |
Q |
| |
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||||| ||||||| |
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| T |
24284454 |
tcctagactcaaa |
24284442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 24231981 - 24232036
Alignment:
| Q |
105 |
aaatctgtcaaaggggagtttgagaacaatgataatttgagaagatcaactaccta |
160 |
Q |
| |
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| T |
24231981 |
aaatcggtcaaaggggtctttgagattaatgataacttgagaagatcaactaccta |
24232036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 379
Target Start/End: Original strand, 24232120 - 24232270
Alignment:
| Q |
229 |
aaaaacatacctctttcttgcttatttccacagtttgttcgacaatagtatcattggtatcaattccaagcttctgatgtagatgtacaactgttgccaa |
328 |
Q |
| |
|
|||| ||| ||||||||||| | || || |||| |||||| |||||| |||| | || || | ||||||||| ||| |||||| || | || | | || |
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| T |
24232120 |
aaaagcatgcctctttcttgttgatgtcaacagcttgttcctcaatagcatcaatagtctcgactccaagcttttgaagtagatttaaacttgctccaaa |
24232219 |
T |
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| Q |
329 |
aacattaggcatcacaaaatgatcgtcggaaatgataaaagtagcagtttc |
379 |
Q |
| |
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|||||||||||| ||| || |||| || |||||||||||||||||| |||| |
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| T |
24232220 |
aacattaggcataacacaaagatcatcagaaatgataaaagtagcattttc |
24232270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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