View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_8 (Length: 626)
Name: NF13561_low_8
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_8 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Complemental strand, 41244867 - 41244271
Alignment:
| Q |
19 |
agtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244867 |
agtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattcc |
41244768 |
T |
|
| Q |
119 |
ttatagtgagtgtgacaatgttgccaaaatatacaagaaagtttcttctggtataagacctgctgcaatgaacaaggtcaaagattcagaggtaaaggaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244767 |
ttatagtgagtgtgacaatgttgccaaaatatacaagaaagtttcttctggtataagacctgctgcaatgaacaaggtcaaagattcagaggtaaaggaa |
41244668 |
T |
|
| Q |
219 |
ttcattgagaggtgtcttgctcagccaagggctagaccatctgctgcagagcttcttaaagatcctttctttgatgaacttgttggtgatgatgaagatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244667 |
ttcattgagaggtgtcttgctcagccaagggctagaccttctgctgcggagcttcttaaagatcctttctttgatgaacttgttggtgatgatgaagatg |
41244568 |
T |
|
| Q |
319 |
aagacgacgaaagtgattatgttaattcatactaaactaaagaactaaacagtcctttatgtgataaatttaatattttaatgtcttagtttctttagtc |
418 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41244567 |
aagacgacgaaaatgattatgttaattcatactaaactaaagaactaaacagtcctttatgtgataaatttaatattttaatgtcttagtttctttagtt |
41244468 |
T |
|
| Q |
419 |
tggtttattaacttttagattatatgtaaatttgcaatttggggcagggctatatggtatgctttgttttgannnnnnnnccccctttggatatggctga |
518 |
Q |
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| T |
41244467 |
tggtttattaacttttagattatatgtaaatttgcaatttggggcagggctatatggtatgctttgttttgatttttttt-cccctttggatatggctga |
41244369 |
T |
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| Q |
519 |
atattggagagggcttaattggggatgttgtcattttgtacataggagattttcttcaacagttgtgaaatgtgaagcatatatattattgaatgatgat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41244368 |
atattggagagggcttaattggggatgttgtcattttgtacataggagattttcttcaacagttgtgaaatgtgaagc--atatattattgaatgatgat |
41244271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 42726772 - 42726881
Alignment:
| Q |
45 |
gaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgcca |
144 |
Q |
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||||| ||||| ||| |||| ||||||||||||||||| |||||| | | |||||||| ||| |||| || || |||||||| ||||||| ||| |||| |
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| T |
42726772 |
gaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagcca |
42726871 |
T |
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| Q |
145 |
aaatatacaa |
154 |
Q |
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| |||||||| |
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| T |
42726872 |
agatatacaa |
42726881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 22263423 - 22263317
Alignment:
| Q |
51 |
tacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgccaaaatat |
150 |
Q |
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||||||||| |||| ||||||||||||||||| |||| |||||||| ||||||||| | |||||||| |||||||| |||||||||||||| || |||| |
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| T |
22263423 |
tacacagaaatggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatat |
22263324 |
T |
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| Q |
151 |
acaagaa |
157 |
Q |
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||||||| |
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| T |
22263323 |
acaagaa |
22263317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 22270417 - 22270523
Alignment:
| Q |
51 |
tacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgccaaaatat |
150 |
Q |
| |
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||||||||| |||| ||||||||||||||||| |||| |||||||| ||||||||| | |||||||| |||||||| |||||||||||||| || |||| |
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| T |
22270417 |
tacacagaaatggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatat |
22270516 |
T |
|
| Q |
151 |
acaagaa |
157 |
Q |
| |
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||||||| |
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| T |
22270517 |
acaagaa |
22270523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 45873884 - 45873746
Alignment:
| Q |
19 |
agtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattcc |
118 |
Q |
| |
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|||||||||| || |||||||| || || | ||||| |||||||||||||||||||||||||| |||| ||| | || ||||||||| || ||||| |
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| T |
45873884 |
agtttatggcacctgaattatatgaagagaattacactgaattggtggacatatactcatttggaatgttagtactggagatggtgacacgagagattcc |
45873785 |
T |
|
| Q |
119 |
ttatagtgagtgtgacaatgttgccaaaatatacaagaa |
157 |
Q |
| |
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||||||||| |||||||||||||| || ||||||||||| |
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| T |
45873784 |
ttatagtgaatgtgacaatgttgcaaagatatacaagaa |
45873746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 22265136 - 22265182
Alignment:
| Q |
111 |
gaaattccttatagtgagtgtgacaatgttgccaaaatatacaagaa |
157 |
Q |
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|||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
22265136 |
gaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaa |
22265182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 20746 - 20855
Alignment:
| Q |
45 |
gaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgcca |
144 |
Q |
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||||| ||||| ||| |||| ||||||||||||||||| |||||| | | |||||||| ||| |||| || || |||||||| ||||||| ||| |||| |
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| T |
20746 |
gaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagcca |
20845 |
T |
|
| Q |
145 |
aaatatacaa |
154 |
Q |
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| |||||||| |
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| T |
20846 |
agatatacaa |
20855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 294
Target Start/End: Complemental strand, 10082363 - 10082130
Alignment:
| Q |
61 |
tggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgccaaaatatacaagaaagt |
160 |
Q |
| |
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|||| |||||||||||||| || |||| ||| |||| ||||||||| || ||||| ||||| || ||||| |||||||| || |||||||| || || |
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| T |
10082363 |
tggttgacatatactcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggt |
10082264 |
T |
|
| Q |
161 |
ttcttctggtataagacctgctgcaatgaacaaggtcaaagattcagaggtaaaggaattcattgagaggtgtcttgctcagccaagggctagaccatct |
260 |
Q |
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||||| || | |||||| | |||||||| | || ||| | || || |||| |||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
10082263 |
gtcttcaggcgtgagacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttgctcaaccaagggctagaccttct |
10082164 |
T |
|
| Q |
261 |
gctgcagagcttcttaaagatcctttctttgatg |
294 |
Q |
| |
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|||| || | || ||||||||||| ||||||| |
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| T |
10082163 |
gctgatgaattgctaaaagatcctttttttgatg |
10082130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 47353781 - 47353711
Alignment:
| Q |
57 |
gaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtga |
127 |
Q |
| |
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||||| || |||||||| || ||||||||||| |||||||||||||| ||||| || |||||||||||| |
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| T |
47353781 |
gaattagttgacatatattcctttggtatgtgcgtattagaaatggtcacatttgagtatccttatagtga |
47353711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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