View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_9 (Length: 440)
Name: NF13561_low_9
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_9 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 144 - 440
Target Start/End: Original strand, 7501585 - 7501881
Alignment:
| Q |
144 |
ttgataattccgcttattacggatataaccaatatgtacaatatcaccgctatttcaaaaatatcaaagttgctaaaccatgttggatttcgtaccgtct |
243 |
Q |
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| T |
7501585 |
ttgataattccgcttattacggatataaccaatatgtacaatatcaccgctatttcagaaatatcaaagttgctaaaccatgttggatttcgtatcgtct |
7501684 |
T |
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| Q |
244 |
accctaaattcggatacagtgtggcagtatagtgccaatataacggatatttaacaattaacactcattagtcataaaactcaaccgagttgtatcattt |
343 |
Q |
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| T |
7501685 |
accctaaattccgatacggtatggcagtatagtgccaatataacggatatttaacaattaacactcattagtcataaaactcaaccgagttgtatcattt |
7501784 |
T |
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| Q |
344 |
acaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctacaaaagtttgctgtagtgttctacaagtcatatcaatt |
440 |
Q |
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| T |
7501785 |
acaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctgcaaaagtttgttgtagtgttctacaagtcatatcaatt |
7501881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7501442 - 7501522
Alignment:
| Q |
1 |
tagtgaaagccgcaaaacagtttaaatagataaatatatagaaactaaagcatggtgcacacaaagaaaagctacacaagt |
81 |
Q |
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| T |
7501442 |
tagtgaaagccgcaaaacagtttaaatagataattatatataaactaaagcatagtgcacacaaataaaagctacacaagt |
7501522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 411
Target Start/End: Original strand, 7498736 - 7498830
Alignment:
| Q |
316 |
cataaaactcaaccgagttgtatcatttacaaaataccagaaattgaatcatttttcattcatatttctgttaatgggagtttcctacaaaagttt |
411 |
Q |
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| T |
7498736 |
cataaaactcaaccaagttgtatcatttagaaaataccagaaattgtatcattcttcatcgatatttcaattact-ggagtttcctacaaaagttt |
7498830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 13450 - 13408
Alignment:
| Q |
309 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
351 |
Q |
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| T |
13450 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
13408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 33280803 - 33280845
Alignment:
| Q |
309 |
cattagtcataaaactcaaccgagttgtatcatttacaaaata |
351 |
Q |
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| T |
33280803 |
cattagtcataaaactcatccgagttgtatcatttacaaaata |
33280845 |
T |
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