View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_11 (Length: 409)
Name: NF13562_high_11
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 2139435 - 2139810
Alignment:
| Q |
18 |
atattaagaggcacaatggtgtaacttgtatacgcctaaacaatttattcttgtactttgtacattacattattgatttaatttacctaacannnnnnnc |
117 |
Q |
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| T |
2139435 |
atattaagaggcacaatggtgtaacttgtatacgcctaaacaatttattcttgtactttgtacattacattattgatttaatttacctaacatttttttc |
2139534 |
T |
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| Q |
118 |
tcctacccaacttgacctctatatatacaaggtccaatatttgtttcaagtaacactcacagattgctctata--tataaaagaaaatggcctccaaatc |
215 |
Q |
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| T |
2139535 |
tcctacccaacttgacctctatatatacaaggtccaatatttgtttcaagtaacactcacagattgctctatatatataaaagaaaatggcctccaaatc |
2139634 |
T |
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| Q |
216 |
cattcttctatgcatttttcttatggtggccaccaatgtataatctttattctattcttcactttcttgattaagtgtttttcacttgaacatacaaaat |
315 |
Q |
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| T |
2139635 |
cattcttctatgcatttttcttatggtggccaccaatgtataatctttattctattcttcactttcttgattaagtgtttttcacttgaacatacaaaat |
2139734 |
T |
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| Q |
316 |
attccttttgattaagtgtttaatttagcctaaatgtaatgcctttatttaatttttaatataatatattctggtg |
391 |
Q |
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| T |
2139735 |
attccttttgattaagtgtttaatttagcctgaatgtaatgcctttattaaatttttaatataatatattctggtg |
2139810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 2123642 - 2123703
Alignment:
| Q |
218 |
ttcttctatgcatttttcttatggtggccaccaatgtataatctttattctattcttcactt |
279 |
Q |
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| T |
2123642 |
ttcttctaggcatttttcttgtgctggccactaaggtataatctttattctacttttcactt |
2123703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 2144951 - 2145014
Alignment:
| Q |
199 |
aaaatggcctccaaatccattcttct---atgcatttttcttatggtggccaccaatgtataat |
259 |
Q |
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| T |
2144951 |
aaaatggcttccaaatccattcttcttctaggcatttttcttatggtggccactaaggtataat |
2145014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 2123454 - 2123496
Alignment:
| Q |
66 |
tcttgtactttgtacattacattattgatttaatttacctaac |
108 |
Q |
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| T |
2123454 |
tcttgtactttgtacattacattattaatttaatgcacctaac |
2123496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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