View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_13 (Length: 348)
Name: NF13562_high_13
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 28840415 - 28840743
Alignment:
| Q |
16 |
aaatattctctccttgaattctcttctactcttccacatgccttaagattgaactggaataactctactcctatttgcacttcatggattggcataactt |
115 |
Q |
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| T |
28840415 |
aaatattctctccttgaattctcttctactcttccacatgccttaagattgaactggaataactctactcctatttgcacttcatggattggcataactt |
28840514 |
T |
|
| Q |
116 |
gcaaccaaaatgaaactaatgtcataagcatccatcttccgggaattggattaaagggtgccattccgaacaacagcagcctaggaaaacttgattccct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28840515 |
gcaaccaaaatgaaactaatgtcataagcatccatcttccgggaattggattaaagggtgccattccgaataacagcagcctaggaaaacttgattccct |
28840614 |
T |
|
| Q |
216 |
tagaatcctaagccttcattcaaatgaacttagtggaaatcttccatctaacattctatctattccttcacttcaatatgttaatcttcaacacaataac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28840615 |
tagaatcctaagccttcattcaaatgaacttagtggaaatcttccatctaacattctatctattccttcacttcaatatgttaatcttcaacacaataac |
28840714 |
T |
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| Q |
316 |
ttcacaggcctaatcccttcttctctctc |
344 |
Q |
| |
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|||||||||||||||||||||||| |||| |
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| T |
28840715 |
ttcacaggcctaatcccttcttctatctc |
28840743 |
T |
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