View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_2 (Length: 972)
Name: NF13562_high_2
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 487
Target Start/End: Original strand, 38893677 - 38894151
Alignment:
| Q |
13 |
gagatgaacttgagcaataatggagtccaaaagcggtgtcctatatatccttttcccccacaactccataaaccccccttccctttatnnnnnnnnttaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
38893677 |
gagatgaacttgagcaataatggagtccaaaagcggtgtcctatatatccttttcccccacaactccataaaacccccttccctttataaaaaaaattaa |
38893776 |
T |
|
| Q |
113 |
agtactttttaaaggaaactgctttatggattcaaaggaatatgcattgcattgcatgcatatatatcttcttaatttcagcccttcaatagttttttaa |
212 |
Q |
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|| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893777 |
agcattttttaaaggaaacagctttatggattcaaaggaatatgcattgcattgcatgcatatatatcttcttaatttcagcccttcaatagttttttaa |
38893876 |
T |
|
| Q |
213 |
caactttacaatcttcctctagcactcaattgccacctttaccttagtgtaaaaagttatgagatatacacttaaatttctattttgatttagtaaatca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893877 |
caactttacaatcttcctctagcactcaattgccacctttaccttagtgtaaaaagttatgagatatacacttaaatttctattttgatttagtaaatca |
38893976 |
T |
|
| Q |
313 |
atatttcaacgtgaaactgcaaagattaatattatctttagatcactagagtacgatcgataaatgtcttctttaaattttttaatattgttgcattctc |
412 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
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| T |
38893977 |
atatttcaacgtgaaactgtaaaaattaatattatctttagatcactggagtacgatcgacaaatgtcttctttaactcttttaatattgttgcattctc |
38894076 |
T |
|
| Q |
413 |
aagatcgaatttgagtaggtaattctattaacctccttgctcctaattaataacttcaacatcaaaataatccac |
487 |
Q |
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| T |
38894077 |
aagaccggatttaagtaggtaattctattaacctccttgctcctaattaataacttcaacatcaaaataatccac |
38894151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 531 - 954
Target Start/End: Original strand, 38894192 - 38894621
Alignment:
| Q |
531 |
gaaaataacaaagaaattaaagacttccatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaac |
630 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894192 |
gaaaataacaaagaaattaaagactttcatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaac |
38894291 |
T |
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| Q |
631 |
accaagaaaatccctagtttgtccccaaacaccctcttcattttgcacccgccttcgttttatggagggcatttgtgacaattcacctgaaatatagctc |
730 |
Q |
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| T |
38894292 |
accaagaaaatccctagtttgtccccaaacaccctcttcattttgcacccgccttcgttttatggagggcatttgtgacaattcacctgaaatatagctc |
38894391 |
T |
|
| Q |
731 |
tcagctgacccaagatcacttgttgtaagaactgaacttgaaccatacaccccacaaaatttgttcccatgatcttgacttggagtattgcatctcaaac |
830 |
Q |
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| T |
38894392 |
tcagctgacccaagatcacttgatgtaagaactgaacttgaaccatacaccccacaaaatttgttcccatgatcttgacttggactattgcatctcaaac |
38894491 |
T |
|
| Q |
831 |
ctaagcttccaaggaataatgattcagttgaagttgtcccaatctgagcagctttttgcaacaaagctgttgctgacatgtttgctgaggttgtttgatg |
930 |
Q |
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| T |
38894492 |
ctaagcttccaaggaataatgattcagttgaagttgtcccaatttgagcagctttttgcaacaaagctgttgctgacatgtttgctgaggttgtttgatg |
38894591 |
T |
|
| Q |
931 |
a------tgtgattggtgttgtgagctata |
954 |
Q |
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| T |
38894592 |
atgagattgtgattggtgttgtgagctata |
38894621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 819 - 951
Target Start/End: Original strand, 30516687 - 30516819
Alignment:
| Q |
819 |
tgcatctcaaacctaagcttccaaggaataatgattcagttgaagttgtcccaatctgagcagctttttgcaacaaagctgttgctgacatgtttgctga |
918 |
Q |
| |
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||||| |||||||||| |||||||||||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
30516687 |
tgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaacaaagctgtagctgacatgtttgctga |
30516786 |
T |
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| Q |
919 |
ggttgtttgatgatgtgattggtgttgtgagct |
951 |
Q |
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| T |
30516787 |
agatgtttgatgtgatatttggtgttgtgagct |
30516819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 30516433 - 30516507
Alignment:
| Q |
576 |
aaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaacaccaagaaaatccctagtttg |
651 |
Q |
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|||||||||||| |||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
30516433 |
aaatcaaatccaaccgttgattgatgaagggtgacaaatggtttgcac-accaacaccaagaaaatccctagtttg |
30516507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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