View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_3 (Length: 894)
Name: NF13562_high_3
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_3 |
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| [»] scaffold1302 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 204 - 876
Target Start/End: Complemental strand, 25126714 - 25126022
Alignment:
| Q |
204 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25126714 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattaaggaggcaacgaaagtgagcttcaattcacgaaatatattatccaaaatg |
25126615 |
T |
|
| Q |
304 |
caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtgtcaaagggg |
403 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25126614 |
caacagtcttgagcagtgtcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtttcaaagggg |
25126515 |
T |
|
| Q |
404 |
ttctgttctacgccaacctcattttgaatggata--------------------agtggcatttgtttcattcagagtggctgcttttattcgttttatc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
25126514 |
ttctgttctacgccaacctcattttgaatggatatagaactagaaatctgaagaagaggcattcgtttcattcagagtggctgcttttattcattttatc |
25126415 |
T |
|
| Q |
484 |
tgaatcttaactacagttatttatgactgatgatggtagtcttgctattattgattccatactggtttggcatttaatttacattttgctattgatgata |
583 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25126414 |
tgaatcttaactacagttatttatgactgatgatggtagtcttgctattattgattgcatactggtttggcatttaatttacatttttctattgatgata |
25126315 |
T |
|
| Q |
584 |
ttattgattgcaattgcgatcacatattggttcgtatagtttttcattgcttactggtttttgtagtggtttgcatactagtttagaactgtgtttgaat |
683 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
25126314 |
ttattgattgcaattgcgatcgcatattggttcgtatagtttttcattgcttactgg-tttcgtagtggtttgcatactagtttggaactgtgtttgaat |
25126216 |
T |
|
| Q |
684 |
actagtttttgaactgctttggaccaatccacatttgtattctgaatttttcggttaacgggataatattcaatgaaatcgatac-ttcacgtggttttt |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
25126215 |
actagtttttgaactgctttggaccaatccacatttgtattctgaatttttcggttaacgggataatattaaatgaaagcgatactttcacgtggttttt |
25126116 |
T |
|
| Q |
783 |
agttgaacaacagtctcttttcaagtacttcaaaacattagtttttgttagaaaaatgtacaatgacggatggtattctagcatgttccctatt |
876 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25126115 |
agttgaacaacagtctcttttcaagtacttcaaaacattagtttttgttagaaaaatgtacaatgacggatggtattctagcatgttccctatt |
25126022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 25128019 - 25127852
Alignment:
| Q |
14 |
tcatcacaaaggtaacaactcactcccattatttcttttttaatgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25128019 |
tcatcacaaaggtaacaactcactcccattattttttttttactgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc |
25127920 |
T |
|
| Q |
114 |
atcaatgaatagtgattctgtatgtttggttccatttttggaggcgtcaaaattgattctagaaattg |
181 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127919 |
atcaatgaatagtgattctgtatgtgtggttccatttttggaggcgtcaaaattgattctagaaattg |
25127852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 204 - 351
Target Start/End: Complemental strand, 7015746 - 7015599
Alignment:
| Q |
204 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg |
303 |
Q |
| |
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|||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| || ||||||||| |
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| T |
7015746 |
gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg |
7015647 |
T |
|
| Q |
304 |
caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc |
351 |
Q |
| |
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|||| ||||||||| ||| || |||||||||||||||||||||| |
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| T |
7015646 |
caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc |
7015599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 204 - 351
Target Start/End: Complemental strand, 7031104 - 7030957
Alignment:
| Q |
204 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg |
303 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| || ||||||||| |
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| T |
7031104 |
gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg |
7031005 |
T |
|
| Q |
304 |
caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc |
351 |
Q |
| |
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|||| ||||||||| ||| || |||||||||||||||||||||| |
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| T |
7031004 |
caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc |
7030957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 204 - 351
Target Start/End: Complemental strand, 7064732 - 7064585
Alignment:
| Q |
204 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg |
303 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||| || ||||||||| |
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| T |
7064732 |
gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg |
7064633 |
T |
|
| Q |
304 |
caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc |
351 |
Q |
| |
|
|||| ||||||||| ||| || |||| ||||||||||||||||| |
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| T |
7064632 |
caactctcttgcgcaacgtcaccatctacacaaatacctcttcaaatc |
7064585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 7060250 - 7060143
Alignment:
| Q |
211 |
aatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatgcaacagt |
310 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||| || ||||||||||||| | |
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|
| T |
7060250 |
aatgcatttcattacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatgcaactct |
7060151 |
T |
|
| Q |
311 |
cttgcgca |
318 |
Q |
| |
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|||||||| |
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|
| T |
7060150 |
cttgcgca |
7060143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1302 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold1302
Description:
Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 204 - 318
Target Start/End: Complemental strand, 968 - 854
Alignment:
| Q |
204 |
gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg |
303 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||| || ||||||||| |
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|
| T |
968 |
gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg |
869 |
T |
|
| Q |
304 |
caacagtcttgcgca |
318 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
868 |
caactctcttgcgca |
854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 15368136 - 15368180
Alignment:
| Q |
132 |
tgtatgtttggttccatttttggaggcgtcaaaattgattctaga |
176 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||||||||||||| |
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|
| T |
15368136 |
tgtatgtttggttccacttttggaggagccaaaattgattctaga |
15368180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 52925803 - 52925759
Alignment:
| Q |
132 |
tgtatgtttggttccatttttggaggcgtcaaaattgattctaga |
176 |
Q |
| |
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|||||||| ||||||| ||||||||| |||||||||||||||||| |
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|
| T |
52925803 |
tgtatgttcggttccacttttggaggagtcaaaattgattctaga |
52925759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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