View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_5 (Length: 528)
Name: NF13562_high_5
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 34835959 - 34835441
Alignment:
| Q |
1 |
actactccaaaggaaatgaaggatctacaagatatagaatccataacctaccaaaaaattctggacctggagtctatgagctcggagtagctgcatcgac |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34835959 |
actactccaaaggaaaggaaggatctacaagatatagaatccataacctaccagaaaattctggacctggagtctatgagctcggagtagctgcatcgac |
34835860 |
T |
|
| Q |
101 |
tagcgggttggggcgtgaaatttacaagcttgccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34835859 |
tagcgggttggggcgtgaaatttacaagctttccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaa |
34835760 |
T |
|
| Q |
201 |
tgttatggtagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctaaccaaaagggacactcattgtttcatgaaatctttcttcaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34835759 |
tgttatggtagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctcaccaaaagggacactcattgtttcatgaaatctttcttcaag |
34835660 |
T |
|
| Q |
301 |
gtttcccaattgtttatagatgggcttctgtaagtacatttcatgctttacacnnnnnnncttcaatttattaagatcaagatgatttcaattgattcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34835659 |
gtttcccaattgtttatagatgggcttctgtaagtacatttcatgctttacactttttttcttcaatttattaagatcaagatgatttcaattgattcat |
34835560 |
T |
|
| Q |
401 |
ttgttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacg |
500 |
Q |
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| T |
34835559 |
ttgttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaataacggtccacg |
34835460 |
T |
|
| Q |
501 |
acgtccaggtgatattctt |
519 |
Q |
| |
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| T |
34835459 |
gcgtccgggtgatattctt |
34835441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 34821447 - 34821372
Alignment:
| Q |
271 |
actcattgtttcatgaaatctttcttcaaggtttcccaattgtttatagatgggcttctgtaagtacatttcatgc |
346 |
Q |
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|||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34821447 |
actcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgc |
34821372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 109 - 339
Target Start/End: Original strand, 35335304 - 35335534
Alignment:
| Q |
109 |
tggggcgtgaaatttacaagcttgccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaatgttatgg |
208 |
Q |
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|||| |||||||||||||||||| |||||||| | |||| ||||||||||||| || ||||||| ||| ||||||||| |||||||||| ||||||| |
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| T |
35335304 |
tgggccgtgaaatttacaagctttccactgaccctcgtcgtatagttgtggtttaccttggaaaagctgacaatgtgagagcaagactccagcgttatgg |
35335403 |
T |
|
| Q |
209 |
tagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctaaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttccca |
308 |
Q |
| |
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|| ||||| ||||||||| |||| |||| ||| ||| |||||| | || |||| ||||||||||| || || ||| ||||| |||||| |
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| T |
35335404 |
caggaatggagctcatttgagtaacacttgtatgtcagatgactcttctctgcgaacgggaaggtcattgtttcaggagatattttcacaaggcttccca |
35335503 |
T |
|
| Q |
309 |
attgtttatagatgggcttctgtaagtacat |
339 |
Q |
| |
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|||||||||||||||||| |||||||||||| |
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| T |
35335504 |
attgtttatagatgggctcctgtaagtacat |
35335534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 485
Target Start/End: Original strand, 35336285 - 35336366
Alignment:
| Q |
404 |
ttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaat |
485 |
Q |
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||||||||||||| | |||||||||| || ||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
35336285 |
ttgaacagatgcaaaatgagggagatgccctgagaacagaatcacagctgcttagtacatttgattatgcatggaacacaat |
35336366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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