View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_high_6 (Length: 514)
Name: NF13562_high_6
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 40682530 - 40682037
Alignment:
| Q |
1 |
acttttcaatttgatcaattttccacatacctgtggcctatataaactaaggctcaattcccactttctactcacaaaacattatctcttcttttgtgag |
100 |
Q |
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| T |
40682530 |
acttttcaatttgatcaattttccacatacctgtggcctatat----taaggctcaattcccactttctactcacaaaacattatctcttcttttgtgag |
40682435 |
T |
|
| Q |
101 |
taagtaattgtttatttcgctcctaaaaaatgtctctcattaaaatatcattgttgtctctctgcttgatatctgctcaggcagctaggtttgacatcgt |
200 |
Q |
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| T |
40682434 |
taagtaattgtttatttcgctcctaaaaaatgtctctcattaaaatatcattgttgtctctctgcttgatatctgctcaggcagctaggtttgacatcgt |
40682335 |
T |
|
| Q |
201 |
aaaccaatgcgcctacaccgtgtggccagcggccacacccagcggtggaggtcggcagttggaccgaggccaatcatggcctctggacgtcccagctgga |
300 |
Q |
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| T |
40682334 |
aaaccaatgcgcctacaccgtgtggccagcggccacacccagcggtggaggtcggcagttggaccgaggccaatcatggcctctggacgtcccagctgga |
40682235 |
T |
|
| Q |
301 |
acctcatcaggtcgaatttggggccgaactggttgcaacttcgacggttcaggccgtggtagttgtcaaactggtgattgcggtggtgccctcagttgca |
400 |
Q |
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| T |
40682234 |
acctcaataggtcgaatttggggccgaactggttgcaacttcgacggttcaggccgtggtagttgtcaaactggtgattgcggtggtgccctcagttgca |
40682135 |
T |
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| Q |
401 |
gcttatccggtaaaagtccgctcactcttaccgaattcacacttaatggtttcaacaatcaggactccattgatttatctgtgattgatggtttcaac |
498 |
Q |
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| T |
40682134 |
gcttatccggtaaaagtccgctcactcttaccgaattcacacttaatggtttcaacaatcaggactccattgatttatctgtgattgatggtttcaac |
40682037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 158 - 498
Target Start/End: Complemental strand, 40676121 - 40675781
Alignment:
| Q |
158 |
ctctctgcttgatatctgctcaggcagctaggtttgacatcgtaaaccaatgcgcctacaccgtgtggccagcggccacacccagcggtggaggtcggca |
257 |
Q |
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||||||| || |||||| | || ||||| ||||| ||||| ||||||| |||| ||||||||||||||||||| | || ||||| ||||| |||||||| |
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| T |
40676121 |
ctctctgtttaatatctacacaagcagcaaggttcgacatagtaaaccgatgctcctacaccgtgtggccagcaggcattcccaggggtggcggtcggca |
40676022 |
T |
|
| Q |
258 |
gttggaccgaggccaatcatggcctctggacgtcccagctggaacctcatcaggtcgaatttggggccgaactggttgcaacttcgacggttcaggccgt |
357 |
Q |
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| T |
40676021 |
gttgacctcgggccaaacatgggccctagacgtcccagctggaacctcagctgccagaatttggggccgaaccggttgcagatttgacggttcaggccgt |
40675922 |
T |
|
| Q |
358 |
ggtagttgtcaaactggtgattgcggtggtgccctcagttgcagcttatccggtaaaagtccgctcactcttaccgaattcacacttaatggtttcaaca |
457 |
Q |
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| T |
40675921 |
ggtagttgtcaaaccggtgattgtggtggagccctcagttgcagcgtatccggtagacctccgaccacacttgccgaatacacacttaacggtggaaaca |
40675822 |
T |
|
| Q |
458 |
atcaggactccattgatttatctgtgattgatggtttcaac |
498 |
Q |
| |
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|| ||| | | ||||| |||| |||||||| ||||||||| |
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| T |
40675821 |
atttggattactttgatatatccgtgattgacggtttcaac |
40675781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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