View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13562_low_1 (Length: 1030)
Name: NF13562_low_1
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 20 - 645
Target Start/End: Complemental strand, 32834242 - 32833617
Alignment:
| Q |
20 |
agaaaccctggaagtcgatgagttctggctaaaggagcatccgatttaggatgatgaattggtgtgtcttggagatcactacatttccttgaaggtatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32834242 |
agaaaccctggaagtcgatgagttctggctaaaggagcatccgatttaggatgatgaattggtgtgtcttggagatcactacatttccttgaaggtatgg |
32834143 |
T |
|
| Q |
120 |
caatgggctctgatccagtagcagaaggtggtttttgttccggtgccgatggtgacttttcttgtgtggaagattcttttccccgtgtagaggctccttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32834142 |
caatgggctctgatccagtagcagaaggtggtttttgttccggtgctgatggtgacttttcttgtgtggaagattcttttcccggtgtagaggctccttc |
32834043 |
T |
|
| Q |
220 |
ttctgctgtagaggcatcttttcccgtttcagagagtagttttgtcagtccgccggagacacgttttcccgatgaggaggcagtttgcttggttgcagag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32834042 |
ttctgctgtagaggcatcttttcccgtttcagagagtagttttgtcagtccgccggagacacattttcccgatgaggagggagtttgcttggttgcagag |
32833943 |
T |
|
| Q |
320 |
gcatcttgtcccgtagtggaggcaggtttctttgatccagaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcaaatggaggtttgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32833942 |
gcatcttgtcccgtagtggaggcaggtttctttgatccggtggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcagatggaggtttgt |
32833843 |
T |
|
| Q |
420 |
ttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833842 |
ttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaat |
32833743 |
T |
|
| Q |
520 |
gttattatgattgatttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactcta |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833742 |
gttattatgattgatttgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactcta |
32833643 |
T |
|
| Q |
620 |
actgtaactgacttctaactgttttc |
645 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32833642 |
actgtaactgacttctaactgttttc |
32833617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 20 - 645
Target Start/End: Complemental strand, 32840656 - 32840031
Alignment:
| Q |
20 |
agaaaccctggaagtcgatgagttctggctaaaggagcatccgatttaggatgatgaattggtgtgtcttggagatcactacatttccttgaaggtatgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840656 |
agaaaccctggaagtcgatgagttctggctaaaggagcatctgatttaggatgatgaattggtgtgtcttggagatcactacatttccttgaaggtatgg |
32840557 |
T |
|
| Q |
120 |
caatgggctctgatccagtagcagaaggtggtttttgttccggtgccgatggtgacttttcttgtgtggaagattcttttccccgtgtagaggctccttc |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32840556 |
caatgggctctgattcagtagcagaaggtggtttttgttccggtgccgatggtgacttttcttgtgtggaagattcttttcccggtgtagaggcaccttc |
32840457 |
T |
|
| Q |
220 |
ttctgctgtagaggcatcttttcccgtttcagagagtagttttgtcagtccgccggagacacgttttcccgatgaggaggcagtttgcttggttgcagag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32840456 |
ttctgctgtagaggcatcttttcccgtttcagagagtagttttgtcagtccgccggagacacgttttgccgatgaggaggcagtttgcttggttgcagag |
32840357 |
T |
|
| Q |
320 |
gcatcttgtcccgtagtggaggcaggtttctttgatccagaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcaaatggaggtttgt |
419 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32840356 |
gcatcttgtcccgtactggaggcaggtttctttgatccggaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcagatggaggtttgt |
32840257 |
T |
|
| Q |
420 |
ttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840256 |
ttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaat |
32840157 |
T |
|
| Q |
520 |
gttattatgattgatttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactcta |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840156 |
gttattatgattgatttgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactcta |
32840057 |
T |
|
| Q |
620 |
actgtaactgacttctaactgttttc |
645 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32840056 |
actgtaactgacttctaactgttttc |
32840031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 672 - 1019
Target Start/End: Complemental strand, 32833586 - 32833239
Alignment:
| Q |
672 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833586 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttaaatgcttaattgcatcttactttatgctgataaacttataa |
32833487 |
T |
|
| Q |
772 |
atgagtgggggaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatg |
871 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833486 |
atgagtggggtaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcgcttgatgtaagtttccatttgatatattggattatg |
32833387 |
T |
|
| Q |
872 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
971 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833386 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
32833287 |
T |
|
| Q |
972 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833286 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
32833239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 390 - 627
Target Start/End: Complemental strand, 29605472 - 29605235
Alignment:
| Q |
390 |
gtggttgttgcgaatcaaatggaggtttgtttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttc |
489 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| ||||||| ||||||||| ||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
29605472 |
gtggttgttgtgaatcagatggaggttgatttttgggattggatggaagatcttgaggtttctttggttaatcagtcatgttgagaggtttctttctttc |
29605373 |
T |
|
| Q |
490 |
tgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttg |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29605372 |
tgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttg |
29605273 |
T |
|
| Q |
590 |
aattggaagcttgcttcacaagtaactctaactgtaac |
627 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29605272 |
aattggaaacttgcttcacaagtaactctaaccgtaac |
29605235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 672 - 801
Target Start/End: Complemental strand, 32840008 - 32839879
Alignment:
| Q |
672 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
771 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32840008 |
cttttggttgacactatactaactcacacttaatcaagcttgttaatctaattctcttcaatgtttaattgcatcttactttatgctggtaaacttataa |
32839909 |
T |
|
| Q |
772 |
atgagtgggggaaaatattaattcagcata |
801 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
32839908 |
atgagtggggaaaaatattaattcagcata |
32839879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 31682656 - 31682760
Alignment:
| Q |
28 |
tggaagtcgatgagttctggctaaaggagcatccgatttaggatgatgaattggtgtgtcttggagatcactacatttccttgaaggtatggcaatgggc |
127 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||| ||||| || |
|
|
| T |
31682656 |
tggaagttgatgagttccggctaaaggagcatccgattgaggatgataaattggtgtgtcttggag---actaggtttccttgaaggtatgacaatgagc |
31682752 |
T |
|
| Q |
128 |
tctgatcc |
135 |
Q |
| |
|
| |||||| |
|
|
| T |
31682753 |
tttgatcc |
31682760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 808 - 873
Target Start/End: Complemental strand, 32839845 - 32839780
Alignment:
| Q |
808 |
atactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgtt |
873 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
32839845 |
atactttacattatgtttgtaatgttcacttgatttaagtttccatttcatttattggattatgtt |
32839780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 735 - 773
Target Start/End: Complemental strand, 29605080 - 29605042
Alignment:
| Q |
735 |
cttaattgcatcttactttatgctgataaacttataaat |
773 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
29605080 |
cttaattgcatcttactttgtgctgataaacatataaat |
29605042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 439 - 620
Target Start/End: Original strand, 19946835 - 19947009
Alignment:
| Q |
439 |
atcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgt |
538 |
Q |
| |
|
|||||| | |||||||| ||| | |||||||||||||| ||| ||||||||| | || |||| |||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
19946835 |
atcttgggtgttctttgctgaatcagtcatgttgagagtttt-tttctttctcacaagagag--tatgaaaaatgtgaaatgttattgtgattattttgt |
19946931 |
T |
|
| Q |
539 |
gatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaa |
620 |
Q |
| |
|
||||| || |||||||||| | |||| |||| |||||||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
19946932 |
gatacacattgttattatatact-agtg-cttt--agtgtatgcttgttggaactagaagcttgcttcacaagtaactctaa |
19947009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 574 - 635
Target Start/End: Original strand, 19947235 - 19947296
Alignment:
| Q |
574 |
agtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttct |
635 |
Q |
| |
|
||||||||||| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19947235 |
agtgtatgctttttggaactagaaacttgcttcacaagtaactctaactgtaacagacttct |
19947296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 774
Target Start/End: Original strand, 19961148 - 19961187
Alignment:
| Q |
735 |
cttaattgcatcttactttatgctgataaacttataaatg |
774 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
19961148 |
cttaactgcatcttactttgtgctgataaacttataaatg |
19961187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 525
Target Start/End: Original strand, 28405748 - 28405835
Alignment:
| Q |
439 |
atcttgagagttctttggtgattgagtcatgttgagaggtttct-ttctttctgagaaaagagaatatggaaaatgtgaaatgttatt |
525 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||| |||||||| | |||| || ||| |||||||||| ||||||| |
|
|
| T |
28405748 |
atcttgatcgttctttggtgattgagccatgttaagaggtttctcttctttctcacaaaattgagtatacaaaatgtgaagtgttatt |
28405835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 628
Target Start/End: Original strand, 28405871 - 28405906
Alignment:
| Q |
593 |
tggaagcttgcttcacaagtaactctaactgtaact |
628 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28405871 |
tggaaacttgcttcacaagtaactctaactgtaact |
28405906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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