View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_low_13 (Length: 382)
Name: NF13562_low_13
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 41444870 - 41444495
Alignment:
| Q |
1 |
acatcaatagaccaattctcaaagcattactggctgagatcgcttgatcttagtttcaactcactagggggtgagatatctttgtcaatttgcaatgcaa |
100 |
Q |
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| T |
41444870 |
acatcaatagaccaattctcaaagcattactggctgagatcccttgatcttagtttcaactcactagggggtgagatatctttgtcaatttgcaatgcaa |
41444771 |
T |
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| Q |
101 |
ctgtacttcaaattcttaacttgtcccacaacaaattaacaggtatgatcccacaatgccttgcaaacttaccattccttcaagttttggacatagagat |
200 |
Q |
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| T |
41444770 |
ctctaattctaattcttaacttgtcccacaacaaatgaacaggtatgatcccacagtgccttgcaaacttaccattccttcaagttttggacatggagat |
41444671 |
T |
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| Q |
201 |
gaataaactttatggttctgtgccaaataccttttcaagcatgactttcagcactctcaatcttaatggcaaccaattagtaggtcctttgccaaaatct |
300 |
Q |
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| T |
41444670 |
gaataaactttatggctctgtgccaaataccttttcaagtatgactttcagcacactcaatcttaatagcaaccaattagtaggtcctttgccaaaatct |
41444571 |
T |
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| Q |
301 |
ttgtccaactgcagaaacctggaggttttaaatcttggtaatgacaacataaaggacacgtttccccctttgcttc |
376 |
Q |
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| T |
41444570 |
ttgtccaactgcagaaacctggaggttttaaatcttggtaatgacattataaaggacacgtttccccattggcttc |
41444495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 41571631 - 41571779
Alignment:
| Q |
43 |
cttgatcttagtttcaactcactagggggtgagatatctttgtcaatttgcaatgcaactgtacttcaaattcttaacttgtcccacaacaaattaacag |
142 |
Q |
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| T |
41571631 |
cttgatcttagttttaacttattagccggtgacatctcttcgtcaatttgcaatagaacttcacttcaattgctcaacttggcacacaacaaattgacag |
41571730 |
T |
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| Q |
143 |
gtatgatcccacaatgccttgcaaacttaccattccttcaagttttgga |
191 |
Q |
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| T |
41571731 |
gcaccattccacattgtcttgcaaacttatcatcccttcaagttttgga |
41571779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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