View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13562_low_17 (Length: 260)
Name: NF13562_low_17
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 51350268 - 51350052
Alignment:
| Q |
23 |
gagtgcacattcgcattta-ggtgagtttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtca |
121 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51350268 |
gagtgcacattcgcatttatggtgaatttgatagaatcgcggtgtgcttctgtgaatttgacagaaactatactttgcagctctaataaaatcaatgtca |
51350169 |
T |
|
| Q |
122 |
ctgtgatattattctgtcattccgaacatgcaaatgtagtaatagaaagtgttgtattatgttagaaagtttttctttttgaaaaagtaaaagcattaaa |
221 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51350168 |
ctgtgatatt---ctgtcattccgaacatgcaaatgtagtaatagaaagtgttgtattatgttagaaagtttttctttttgaaaaagtaaaagcattaaa |
51350072 |
T |
|
| Q |
222 |
taatttgctgtgtaagttgc |
241 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51350071 |
taatttgctgtgtaagttgc |
51350052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University