View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_low_7 (Length: 503)
Name: NF13562_low_7
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_7 |
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| [»] scaffold0015 (4 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 37509 - 37976
Alignment:
| Q |
18 |
tcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatgtttatgcattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37509 |
tcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatgtttatgcattt |
37608 |
T |
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| Q |
118 |
ggtgtacttgttttggaagttgtgtgtggaaaaagaccaagaaatatgtatgcacaagatgattataaatatagtattgtgtattgggtttgggaacttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37609 |
ggtgtacttgttttggaagttgtgtgtggaaaaagaccaagaaatatgtatgcacaagatgattataaatacagtattgtgtattgggtttgggaacttt |
37708 |
T |
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| Q |
218 |
atggagagggaaaaatagttagtgcagttgatgataggataagtagtgaagaggatgaaactgaaaaggttgaaattgtgcttattcttgggttgtcttg |
317 |
Q |
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| T |
37709 |
atggagagggaaaaatagttagtgcagttgatgataggataagtagtgaagaggaagaaattgaaaaggttgaaattgtgcttattcttgggttgtcttg |
37808 |
T |
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| Q |
318 |
ttgtcatccaaatccacatgaaagaccaacaatgaaaactgtattgatggttcttaatggagaagcttctcctccgatggttccgattgaaagaccggct |
417 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37809 |
ttgtcatccaaatccacatgaaagaccatcaatgaaaactgtattgatggttcttaatggagaagcttctcctccaatggttccgattgaaagaccggct |
37908 |
T |
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| Q |
418 |
tttgtttggcctgctatgccttcatctttcaaacaaaatgaaaatggttctcttatcagtggaactct |
485 |
Q |
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| T |
37909 |
tttgtatggcctgctatgccttcatctttcaaacaaaatgagaatggttctcttatcagtggaactct |
37976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 18914 - 18447
Alignment:
| Q |
18 |
tcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatgtttatgcattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18914 |
tcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatatttatgcattt |
18815 |
T |
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| Q |
118 |
ggtgtacttgttttggaagttgtgtgtggaaaaagaccaagaaatatgtatgcacaagatgattataaatatagtattgtgtattgggtttgggaacttt |
217 |
Q |
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| T |
18814 |
ggtgtacttgttttggaagttgtgtgtggaaaaagaccaagaaatatgtatgcacaagatgattataaatatagtattgtgtattgggtttgggagcttt |
18715 |
T |
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| Q |
218 |
atggagagggaaaaatagttagtgcagttgatgataggataagtagtgaagaggatgaaactgaaaaggttgaaattgtgcttattcttgggttgtcttg |
317 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18714 |
atgaagagggaaaaaaagttagtgcagttgatgataggataagtagtgaagaggctgaaactgaaaaggttgaaattgtgcttattcttgggttgtcttg |
18615 |
T |
|
| Q |
318 |
ttgtcatccaaatccacatgaaagaccaacaatgaaaactgtattgatggttcttaatggagaagcttctcctccgatggttccgattgaaagaccggct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18614 |
ttgtcatccaaatccacatgaaagaccaacaatgaaaactgttttgatggttctaaatggagaagcttctcctccaatggttccgattgaaagaccggct |
18515 |
T |
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| Q |
418 |
tttgtttggcctgctatgccttcatctttcaaacaaaatgaaaatggttctcttatcagtggaactct |
485 |
Q |
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| T |
18514 |
tttgtttggaatgctatgccttcatctttcaaacaaaatgaaaatggttctcttatcagtggaactct |
18447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 11822 - 12079
Alignment:
| Q |
18 |
tcatcattcaacaaaggaaattgcaggaacaccgggctatatggcaccggaaatatttttaaccggaagagcgacggttgaaacagatgtttatgcattt |
117 |
Q |
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||||||||| |||||||||||||| |||||||| || ||||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
11822 |
tcatcattcgacaaaggaaattgctggaacaccaggttatatggcaccagaaacttttttaaccggaagagcaacggtcgaaacagatgtgtatgcattt |
11921 |
T |
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| Q |
118 |
ggtgtacttgttttggaagttgtgtgtggaaaaagaccaagaaatatgtatgcacaagatgattataaatatagtattgtgtattgggtttgggaacttt |
217 |
Q |
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||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
11922 |
ggtgtacttgttttggaagttatttgtggaaaaagaccaggaaatgtgtatgcacaagatgactataaaaatagtattgtgtattgggtttgggagcttt |
12021 |
T |
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| Q |
218 |
atggagagggaaaaatagttagtgcagttgatgataggataagtagtgaagaggatga |
275 |
Q |
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| T |
12022 |
atggaaatggaaaaattgttagtgttgtggataaaaggataagtggtaaaggggatga |
12079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 286 - 485
Target Start/End: Original strand, 12111 - 12310
Alignment:
| Q |
286 |
gttgaaattgtgcttattcttgggttgtcttgttgtcatccaaatccacatgaaagaccaacaatgaaaactgtattgatggttcttaatggagaagctt |
385 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
12111 |
gttgaaattgtgcttattttagggttggcttgttgtcatccaaatccaaataaaaggccatcaatgaaaactgttttgatggttcttaatggagaagctt |
12210 |
T |
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| Q |
386 |
ctcctccgatggttccgattgaaagaccggcttttgtttggcctgctatgccttcatctttcaaacaaaatgaaaatggttctcttatcagtggaactct |
485 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |||| || |||||||||||| ||||||||| |
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| T |
12211 |
ctcctccaatggttccgattgaaagaccggcttttgtttggccagccatgccttcatctttcaaagaaggtgaagatagttctcttatcaatggaactct |
12310 |
T |
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