View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13562_low_8 (Length: 477)
Name: NF13562_low_8
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 12541014 - 12541359
Alignment:
| Q |
21 |
tcatgtgtgttcttgcttgaccttagctttcctgataataatatgggtctagctgtaccatattgaaataaggatggatgctgctgcgaaggaaggacgg |
120 |
Q |
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| T |
12541014 |
tcatgtgtgttcttgcttgaccttagctttcctgataataatatgggtctagctgtaccatattgaaataaggatggatccttca---aaggaaggacgg |
12541110 |
T |
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| Q |
121 |
aaggagctac---ctgcctgtagaatattgtagattacatgcttatgctttctagttttctaatttaaggaccatgcttctggttttactttcacttcta |
217 |
Q |
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| T |
12541111 |
aaggagctacgtcctgccggtggaatattgtagattacatgc------tttctagttttttaatttaaggaccatgcttctgcttttactttcacttcta |
12541204 |
T |
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| Q |
218 |
tatctttgcttccaagtgtgtgcactgcaaaataataatgttcaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctctttgatt |
317 |
Q |
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| T |
12541205 |
catctttgcttccaagtgtgtgcactgcaaaataataatgcttaattaatgtaattctaatttgttcatgtgtttcttgttttatattttctctttgatt |
12541304 |
T |
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| Q |
318 |
ataccttgtcattgtcttgccttgtgacgttaacttcggatggatcttactctta |
372 |
Q |
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| T |
12541305 |
atgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta |
12541359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 12535075 - 12534982
Alignment:
| Q |
163 |
tgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctatat----ctttgcttccaagtgtgtgcactgcaaaataa |
252 |
Q |
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| T |
12535075 |
tgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgcactagaaaataa |
12534982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 384192 - 384135
Alignment:
| Q |
162 |
atgctttctagttttctaatttaaggaccatgcttctggttttactttcacttctata |
219 |
Q |
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| T |
384192 |
atgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctata |
384135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 464
Target Start/End: Original strand, 44244233 - 44244294
Alignment:
| Q |
405 |
tatgatcttattgattttgtaatagaccata---caatctaggattgtgtttccaattcatct |
464 |
Q |
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| T |
44244233 |
tatgatcttattgatttt-taatagaccatattacaatctaggattgagtttctcattcatct |
44244294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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