View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13562_low_9 (Length: 456)
Name: NF13562_low_9
Description: NF13562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13562_low_9 |
 | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0274 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 16461 - 16886
Alignment:
| Q |
16 |
atcctaacaaactataaataataataatatgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaagcaaaacttgaatgcagtattgc |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16461 |
atcctaacaaattataaataataataatatgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaaacaaaacttgaatgcagtattgc |
16560 |
T |
|
| Q |
116 |
agttgatgtaataagccattactaatcactttcaaactcaaaattgggtttt-gaaaaagaaagttccttgatcaaccaatcacttttggccgggtgtta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16561 |
agttgatgtaataagccattactaatcactttcaaactcaaaattgggttttagaaaaagaaagttccttgatcaaccaatcacttttggccgggggtta |
16660 |
T |
|
| Q |
215 |
agctgtgaatttctcagtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaatt |
314 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16661 |
agctatgaatttctaagtccttaactccaattctttcaaactcagtgataagaattttcacatattcaactaaatcagccttaaatttagatgagcagtt |
16760 |
T |
|
| Q |
315 |
tcctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16761 |
tcctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacacgaccctagaatatcgtgtgct |
16860 |
T |
|
| Q |
415 |
cggctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
16861 |
cggctgtagaaatgccccacaacaag |
16886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 6994 - 6571
Alignment:
| Q |
16 |
atcctaacaaactataaataataataatatgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaagcaaaacttgaatgcagtattgc |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6994 |
atcctaacaaattataaataataataatatgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaaacaaaacttgaatgcagtattgc |
6895 |
T |
|
| Q |
116 |
agttgatgtaataagccattactaatcactttcaaactcaaaattgggttttgaaaaagaaagttccttgatcaaccaatcacttttggccgggtgttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6894 |
agttgatgtaataagccattactaatcactttcaaactcaaaat-gggttttgaaaaagaaagttccttgatcaaccaatcacttttggccgggggttaa |
6796 |
T |
|
| Q |
216 |
gctgtgaatttctcagtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaattt |
315 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6795 |
gctatgaatttctaagtccttaactccaattctttcaaactcagtgataagaattttcacatattcaactaaatcagccttaaatttagatgagcagttt |
6696 |
T |
|
| Q |
316 |
cctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6695 |
cctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacacgaccctagaatatcgtgtgctc |
6596 |
T |
|
| Q |
416 |
ggctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6595 |
ggctgtagaaatgccccacaacaag |
6571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 41427506 - 41427083
Alignment:
| Q |
16 |
atcctaacaaactataaataataataatatgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaagcaaaacttgaatgcagtattgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41427506 |
atcctaacaaactataaataataata---tgcaaccagtatgtacaattatgtcaagtttttaactaaatgttaaaaacaaaacttgaatgcagtattgc |
41427410 |
T |
|
| Q |
116 |
agttgatgtaataagccattactaatcactttcaaactcaaaattgggttttgaaaaagaaagttccttgatcaaccaatcacttttggccgggtgttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41427409 |
agttgatgtaataagccattactaatcactttcaaactcaaaattgggttttgaaaaagaaagttccttgatcaaccaatcacttttggccgggtgttaa |
41427310 |
T |
|
| Q |
216 |
gctgtgaatttct--cagtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaat |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
41427309 |
gctgtgaatttctcacagtccttaactccaattctttcagactcggtgacaagaattttcacatattcaactaaatcagtcttaaatttagatgagcagt |
41427210 |
T |
|
| Q |
314 |
ttcctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgc |
413 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41427209 |
ttcttttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttctgtgtatgctttacatgaccctagaatatcgtgtgc |
41427110 |
T |
|
| Q |
414 |
tcggctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41427109 |
tcggctgtagaaatgccccacaacaag |
41427083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 219 - 440
Target Start/End: Complemental strand, 41433700 - 41433477
Alignment:
| Q |
219 |
gtgaatttctca--gtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaatttc |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | | |||| | |||||| | ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
41433700 |
gtgaatttctcacagtccttaactccaattctttcaaactctttgacaagattattcacaagtccaactaaatcagccttaaatttatctgagcactttc |
41433601 |
T |
|
| Q |
317 |
ctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctcg |
416 |
Q |
| |
|
||| ||||| || ||||| || ||||||||| || | |||||||||||||||||||||||| |||||| |||||| ||| | |||||||| |||||||| |
|
|
| T |
41433600 |
cttcaccctcatcaacatcttgaaccccgcccttcgccaaacaaccaacttgaacaccttccatgtatgttttacacgacgccagaatatcatgtgctcg |
41433501 |
T |
|
| Q |
417 |
gctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41433500 |
gctgtagaaatgccccacaacaag |
41433477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 440
Target Start/End: Complemental strand, 41450037 - 41449826
Alignment:
| Q |
229 |
cagtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaatttcctttacccttat |
328 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | ||| | ||||||| | |||||||| |||||||||||||| ||||| ||||||| || || || |
|
|
| T |
41450037 |
cagtccttaactccgattctttcaaactccttgaccagattattcacatgtccaactaaaccagccttaaatttatccgagcactttccttcactctcat |
41449938 |
T |
|
| Q |
329 |
taacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctcggctgtagaaatg |
428 |
Q |
| |
|
||| || ||||| |||||| | ||| ||||||||||| |||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||| |
|
|
| T |
41449937 |
cgacaattcgaaccctgcctttcgccaaataaccaacttgagcaccttccatgtatgctttacatgaccccaaaatattatatgctcggctgtagaaatg |
41449838 |
T |
|
| Q |
429 |
ccccacaacaag |
440 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41449837 |
ccccacaacaag |
41449826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 41443263 - 41443167
Alignment:
| Q |
347 |
ctttgacaaaacaaccaacttgaacaccttccg---tgtatgctttacatgaccctagaatatcgtgtgctcggctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
|||||| |||||| |||||| ||||||| ||| ||||||||||||||| || || ||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
41443263 |
ctttgaaaaaacagccaactcgaacaccctcctccatgtatgctttacatgttcccaggatatcatgtgctctgctgtagaaatgccccacaacaag |
41443167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 219 - 440
Target Start/End: Complemental strand, 33371125 - 33370901
Alignment:
| Q |
219 |
gtgaatttctca--gtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagat-gagcaattt |
315 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| |||||| ||| |||| | ||||||| | |||||||| |||||||||||||| | ||||| ||| |
|
|
| T |
33371125 |
gtgaatttctcacagtccttaacttcaattcttttaaactctttaacaagagtattcacatgtccaactaaaccagccttaaatttatcttgagcatttt |
33371026 |
T |
|
| Q |
316 |
cctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctc |
415 |
Q |
| |
|
|||| ||||| || ||||| || ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
33371025 |
ccttcaccctcatcaacatcttgaactccgcctttggccaaacaaccaacttgaacaccttccgtgtatgctttacatgacctcaggatatcatgtgctc |
33370926 |
T |
|
| Q |
416 |
ggctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33370925 |
tgctgtagaaatgccccacaacaag |
33370901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 229 - 440
Target Start/End: Complemental strand, 33364756 - 33364545
Alignment:
| Q |
229 |
cagtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaatttcctttacccttat |
328 |
Q |
| |
|
||||||||||||||||||||| ||||||| || | ||| || |||||| |||||||| ||| ||||||| | |||||| |||||||||| || || |
|
|
| T |
33364756 |
cagtccttaactccaattcttacaaactctgtgactagataattaacatatccaactaaaccagacttaaatccatctgagcattttcctttactctcat |
33364657 |
T |
|
| Q |
329 |
taacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctcggctgtagaaatg |
428 |
Q |
| |
|
|||| | | | |||| | |||||| |||||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
33364656 |
caacaatgttatcccctcttttgaccaaacaaccaacttgaacaccttccatgtaggctttacatgacctcaggatatcatgtgctctgctgtagaaatg |
33364557 |
T |
|
| Q |
429 |
ccccacaacaag |
440 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33364556 |
ccccacaacaag |
33364545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 219 - 440
Target Start/End: Original strand, 7762120 - 7762343
Alignment:
| Q |
219 |
gtgaatttctca--gtccttaactccaattctttcaaactcagtaataagaattttcacatattcaactaaatcagccttaaatttagatgagcaatttc |
316 |
Q |
| |
|
|||||||||||| |||||| |||| |||| |||||||||| | |||| |||||||| | |||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
7762120 |
gtgaatttctcacagtccttgactcaaattttttcaaactcttggacaagagttttcacacacccaactaaaccagccttaaatgtagatgagcaccttc |
7762219 |
T |
|
| Q |
317 |
ctttacccttattaacattttcaaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttacatgaccctagaatatcgtgtgctcg |
416 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||| |
|
|
| T |
7762220 |
ctttacccttgttaacattttgaaccctgcctttgtcgaaacaaccaacttgaacaccttccatgtatgctttacataaacctagaatatgatgtgctct |
7762319 |
T |
|
| Q |
417 |
gctgtagaaatgccccacaacaag |
440 |
Q |
| |
|
| |||||||||| |||| |||||| |
|
|
| T |
7762320 |
gttgtagaaatggcccataacaag |
7762343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 7762050 - 7762094
Alignment:
| Q |
156 |
aaattgggttttgaaaaagaaagttccttgatcaaccaatcactt |
200 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | |||||||||| |
|
|
| T |
7762050 |
aaattgggttttgaaaacgaatgttccttgataagccaatcactt |
7762094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 21221282 - 21221335
Alignment:
| Q |
339 |
aaccccgcctttgacaaaacaaccaacttgaacaccttccgtgtatgctttaca |
392 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| |||| ||| ||||||||||||| |
|
|
| T |
21221282 |
aaccccacctttgaccaaacaaccaacctgagcaccatccatgtatgctttaca |
21221335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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