View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13563_high_2 (Length: 347)
Name: NF13563_high_2
Description: NF13563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13563_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 11671340 - 11671660
Alignment:
| Q |
2 |
catcatcttgggtagcatcggttgtcatggaaacaagtcgaatgcatgcacatatgactcgactacatttggtaaggatatgaacccttcaaccctattc |
101 |
Q |
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| T |
11671340 |
catcatcttgggtagcatcggttgtcatggaaacaagtcgaatgcatgcacatacgactcgactacatttggtaaggatatgaatccttcaatcctattc |
11671439 |
T |
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| Q |
102 |
tactcgaattttccctcctttttctatgttttttatttgttatcttcatgtttgccttagaaacttagaaactataatagtagtaaaaatatctcgcatg |
201 |
Q |
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| T |
11671440 |
tactcgaattttccctcctttttctatgttttttatttgttatcttcgtgtttgtctta--------gaaactataatagtagtaaaaatatctcgcatg |
11671531 |
T |
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| Q |
202 |
ggaatattgaatttgatatgtatccggtgattaaggatcttttttcaatacaaaactaaatcatgaagaagatgaattgaatgtgaaaaatgaattatga |
301 |
Q |
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| T |
11671532 |
ggaatattgaatttgatatgtatccggtgattaaggatcttttttcaatacaaaactaaatcatgaagaagatgaattgaatgtgaaaaatgaattatga |
11671631 |
T |
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| Q |
302 |
ttcaattagtttgaaatttacattgcaag |
330 |
Q |
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| T |
11671632 |
ttcaattagtttgaaatttacattgcaag |
11671660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 11672656 - 11672931
Alignment:
| Q |
48 |
tgcacatatgactcgactacatttggtaaggatatgaacccttcaaccctattctactcgaattttccctcctttttct-atgttttttatttgttatct |
146 |
Q |
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| T |
11672656 |
tgcatatatgactaggctacatttggtaaggatatgaatccttcaaccctattctactcgaattttccctctttttttttatgttttttatttgttatct |
11672755 |
T |
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| Q |
147 |
tcatgtttgccttagaaacttagaaactataatagtagtaaaaatatctcgcatgggaatattgaatttgatatgtatccggtgattaaggatctttttt |
246 |
Q |
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| T |
11672756 |
ttatgtttgtctta--------gaaactataatagtagtaaaaatgtctcacatgggaatattgaatttgatatgtatcccgtgattaaggatttttttt |
11672847 |
T |
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| Q |
247 |
caatacaaaactaaatcatgaagaagatgaattgaatgtgaaaaatgaattatgattcaattagtttgaaatttacattgcaag |
330 |
Q |
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| T |
11672848 |
taattcaaaactcaatcatgaagaagatgaattgaatttgaaaaatgaattatgattcaattagtttgaaatgtacattgcaag |
11672931 |
T |
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