View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13563_low_1 (Length: 522)
Name: NF13563_low_1
Description: NF13563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13563_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 21234708 - 21234822
Alignment:
| Q |
16 |
tcaataaattgtctctcaagtcattcatatccatctgatgcatcctgaccaacaagttgacaataacatttgacaatcttgatgtcacaaacactctcac |
115 |
Q |
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| T |
21234708 |
tcaataaattgtctctcaagtcattcatattcatctgatgcatcctgaccaacaagttgaaaataacatttgacaatcttgatgtcacaaacactctcac |
21234807 |
T |
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| Q |
116 |
taatggcatgcacga |
130 |
Q |
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| T |
21234808 |
taatggcatgcacga |
21234822 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 21234839 - 21234909
Alignment:
| Q |
430 |
atcctaaccctatgtgatttccctactcgtattccatgttcatcgtattccataatcatcattatttatatatctt |
505 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
21234839 |
atcctaaccctatgtgatttccctactcgtat-----gttcatcgtattccataatgatcattatttatatatctt |
21234909 |
T |
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