View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13563_low_3 (Length: 288)
Name: NF13563_low_3
Description: NF13563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13563_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 51035719 - 51035471
Alignment:
| Q |
6 |
aaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataa |
105 |
Q |
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| T |
51035719 |
aaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagatac |
51035620 |
T |
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| Q |
106 |
tccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacattatatatgaagagaaaaacttccattgagagttcaa |
205 |
Q |
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| T |
51035619 |
tccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacatt---------------aacttccattgagagttcaa |
51035535 |
T |
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| Q |
206 |
gttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtga |
269 |
Q |
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| T |
51035534 |
gttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtga |
51035471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 51031528 - 51031381
Alignment:
| Q |
6 |
aaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataa |
105 |
Q |
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| T |
51031528 |
aaattattgttggaagcccttgccaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaaatac |
51031429 |
T |
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| Q |
106 |
tccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaac |
153 |
Q |
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| T |
51031428 |
tacatcttgttgatggaacaaccatcaaaaccaaggtaattaaacaac |
51031381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 51031330 - 51031230
Alignment:
| Q |
169 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
268 |
Q |
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| T |
51031330 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
51031231 |
T |
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| Q |
269 |
a |
269 |
Q |
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| T |
51031230 |
a |
51031230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 51064082 - 51063982
Alignment:
| Q |
169 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
268 |
Q |
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| T |
51064082 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttgcaatttgtggaaaaggtattgattgggtgtg |
51063983 |
T |
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| Q |
269 |
a |
269 |
Q |
| |
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| |
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| T |
51063982 |
a |
51063982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 51064273 - 51064129
Alignment:
| Q |
9 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
108 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | |||||||| || || || ||| | | |
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| T |
51064273 |
ttattgttggaagcccttgcaaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaaatactac |
51064174 |
T |
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| Q |
109 |
atcttgctgatggaacaaccatcaaaactaaggtaattaaacaac |
153 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
51064173 |
atcttgttgatggaacaaccatcaaaaccaaggtaattaaacaac |
51064129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 40616515 - 40616650
Alignment:
| Q |
9 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
108 |
Q |
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|||||||||||||||||||| | ||| ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||| || | ||||||| ||| |
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| T |
40616515 |
ttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatactcc |
40616614 |
T |
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| Q |
109 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
144 |
Q |
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||||||| |||||||||||||||||||| ||||||| |
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| T |
40616615 |
atcttgccgatggaacaaccatcaaaaccaaggtaa |
40616650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 51069676 - 51069541
Alignment:
| Q |
9 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
108 |
Q |
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||||||||||||||||||| |||||||||||| | | |||||||||| ||||||||||| || |||||||| | |||||||| || | ||| ||| | | |
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| T |
51069676 |
ttattgttggaagcccttggcaatgaacttccaaatagcaccattaggtacatgtcaaaagtcgttgctatagaggaatctggattctttaaaatactac |
51069577 |
T |
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| Q |
109 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
144 |
Q |
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|||||| ||||||||||||||||||||| ||||||| |
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| T |
51069576 |
atcttgttgatggaacaaccatcaaaacaaaggtaa |
51069541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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