View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_high_13 (Length: 468)
Name: NF13564_high_13
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Complemental strand, 28434162 - 28433719
Alignment:
| Q |
10 |
agtgaaatgaaatgcaatatagaaacacagcttagtctaacctgaataggaattgacgcaacaagtgcttcaacgcccaaaacaatattaggatcaccac |
109 |
Q |
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| T |
28434162 |
agtgacatgaaatgcaatatagaaacacagcttagtctaacctgaataggaattgacgcaacaagtgcttcaacgcccaaaacaatattaggatcaccac |
28434063 |
T |
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| Q |
110 |
cccaacggaaatcaatgtccattatgatttgaccttttttaagactctgaacacgaatgcctgcatggatgaacaaactatgcatgcattatttcttcat |
209 |
Q |
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| T |
28434062 |
cccaacggaaatcaatgtccattatgatttgaccttttttaagactctgaacacgaatgcctgcatggatgaacaaactatgcatgcattatttcttcat |
28433963 |
T |
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| Q |
210 |
ataccaaaaggcgcaacagaaaaatagatagaaaagacaaggggtataaaagtagcattttgtgacatttttgttctgccttattgaacaatactgacgg |
309 |
Q |
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| T |
28433962 |
ataccaaaaggcgcaacagaaaaatagatagaaaagacaaggggtataaaagtagcattttgtgacatttttgttctgccttattgaacaatactgacgg |
28433863 |
T |
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| Q |
310 |
gggtaactcgtaagtcaaacattttaataacaatcctattaatgctgtcaacattttcatatattcgtagatcctaaaaagcaaaattgttgttacaagg |
409 |
Q |
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| T |
28433862 |
gggtaactcgtaagtcaaacattttaataacaatcctattaatgctgtcaacattttcatatattcgtagatcctaaaaagcaaaattgttgttacaagg |
28433763 |
T |
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| Q |
410 |
cttatgttgcatataagaaacctaaagtattttatcataaaatt |
453 |
Q |
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| T |
28433762 |
cttatgttgcatataagaaacctaaagtattttatcataaaatt |
28433719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 12971129 - 12971264
Alignment:
| Q |
48 |
aacctgaataggaattgacgcaacaagtgc---ttcaacgcccaaaacaatattaggatcaccaccccaacggaaatcaatgtccattatgatttgacct |
144 |
Q |
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|||||||||||| ||||| |||||||| || ||| || |||||| |||| | |||||||||||||| |||| ||| | ||||||||||||||||||| |
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| T |
12971129 |
aacctgaatagggattgatgcaacaagggcagcttcgacagccaaaataatactgggatcaccaccccagcggagatctacgtccattatgatttgacct |
12971228 |
T |
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| Q |
145 |
tttttaagactctgaacacgaatgcctgcatggatg |
180 |
Q |
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| T |
12971229 |
ttggtaagactctgcacacgaatacctgtatggatg |
12971264 |
T |
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