View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_high_14 (Length: 457)
Name: NF13564_high_14
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 212 - 441
Target Start/End: Complemental strand, 44005410 - 44005181
Alignment:
| Q |
212 |
tactttgaatattttcaagcttcatattattatttactttgaattagtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttaca |
311 |
Q |
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| T |
44005410 |
tactttgaatattttcaagcttcatattattatttactttgaattagtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttaca |
44005311 |
T |
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| Q |
312 |
aagagttcatgttacatgtgtcatagcatcaaacaacttttctatgaacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44005310 |
aagagttcatgttacatgtgtcatagcatcaaacaacttttctatgaacttggagcaagtcctgcagtatatgaactagaaaatgatacatatggtagag |
44005211 |
T |
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| Q |
412 |
aaatggaatgggctttgaggggtaattttg |
441 |
Q |
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| T |
44005210 |
aaatggaatgggctttgaggggtaattttg |
44005181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 213 - 441
Target Start/End: Complemental strand, 44009331 - 44009107
Alignment:
| Q |
213 |
actttgaatattttcaagcttcatattattatttactttgaattagtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttacaa |
312 |
Q |
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| T |
44009331 |
actttgaatattttcaagattcatatttttatatatatt----tagtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttacaa |
44009236 |
T |
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| Q |
313 |
agagttcatgttacatgtgtcatagcatcaaacaacttttctatgaacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagaga |
412 |
Q |
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| T |
44009235 |
agagttcatgttacatgtgtcatagcatcaaacaacttttctatgaacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagaga |
44009136 |
T |
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| Q |
413 |
aatggaatgggctttgaggggtaattttg |
441 |
Q |
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| T |
44009135 |
aatggaatgggctttgaggggtaattttg |
44009107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 44005600 - 44005463
Alignment:
| Q |
21 |
atccaaacaaatctctgaaatatctttccttttctctctttcctatccaatttaactgtaattaattttgttttctacttttctatattatatacaatgc |
120 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44005600 |
atccaaacaaatctctgaaagatctttccttttctctctttcctatccaatttaactgtaattaattttgctttctacttttctatattatatacaatgc |
44005501 |
T |
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| Q |
121 |
aatccactttcctcactagccactataaataagaggta |
158 |
Q |
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| T |
44005500 |
aatccactttcctcactagccactataaataagaggta |
44005463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 44009500 - 44009386
Alignment:
| Q |
46 |
ttccttttctct--ctttcctatccaatttaactgtaattaattttgttttctacttttctatattatatacaatgcaatccactttcctcactagccac |
143 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||| |||| | ||||||||||||||||||| | |||| |
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| T |
44009500 |
ttccttttctctttctttcctatccaatttaactataattatttctgttttatacttttctatatattatatattgcaatccactttcctcacaaaccac |
44009401 |
T |
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| Q |
144 |
tataaataagaggta |
158 |
Q |
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| T |
44009400 |
tataaataagaggta |
44009386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 257 - 431
Target Start/End: Original strand, 39846625 - 39846799
Alignment:
| Q |
257 |
agtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttacaaagagttcatgttacatgtgtcatagcatcaaacaacttttctat |
356 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| | |||| | |||||| |
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| T |
39846625 |
agtaatggatagagtgaaggatttggcatcaaagaaagctgcagttatattcacaaagagttcatgctacatgtgtcacagcataacacaattgttctat |
39846724 |
T |
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| Q |
357 |
gaacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagagaaatggaatgggctttgagg |
431 |
Q |
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|| || |||||||||||||| || |||| || |||||||| | |||||||| ||||||||| ||||||||||| |
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| T |
39846725 |
gagctaggagcaagtcctgctgtgcatgagcttgacaatgaaccctatggtagggaaatggaaagggctttgagg |
39846799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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