View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13564_high_16 (Length: 429)

Name: NF13564_high_16
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13564_high_16
NF13564_high_16
[»] chr8 (5 HSPs)
chr8 (9-292)||(30666044-30666327)
chr8 (340-414)||(30665955-30666029)
chr8 (248-300)||(2373280-2373332)
chr8 (258-302)||(16233704-16233748)
chr8 (255-287)||(29968386-29968418)
[»] chr5 (4 HSPs)
chr5 (239-368)||(29822260-29822388)
chr5 (240-292)||(19005820-19005872)
chr5 (256-300)||(20869238-20869282)
chr5 (243-287)||(39573787-39573831)
[»] chr4 (3 HSPs)
chr4 (239-287)||(10758746-10758794)
chr4 (243-284)||(50073560-50073601)
chr4 (243-287)||(1186666-1186710)
[»] chr6 (2 HSPs)
chr6 (239-284)||(18021735-18021780)
chr6 (239-287)||(4002794-4002842)
[»] chr3 (2 HSPs)
chr3 (239-283)||(31214508-31214552)
chr3 (255-287)||(46719961-46719993)
[»] chr7 (1 HSPs)
chr7 (255-300)||(47113365-47113410)
[»] scaffold0302 (1 HSPs)
scaffold0302 (255-287)||(17490-17522)
[»] chr1 (1 HSPs)
chr1 (243-283)||(30928629-30928669)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 30666327 - 30666044
Alignment:
Q  9 acatcatcaataaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcgacaaaatga 108  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  30666327 acatcaccaacaaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcgaaaaaatca 30666228  T
Q  109 agtgacacactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacattcaaaatata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30666227 agtgacacactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacattcaaaatata 30666128  T
Q  209 agagcctatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 292  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30666127 agagcttatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgtgattttggcccaccaa 30666044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 30666029 - 30665955
Alignment:
Q  340 tttgctaagaagacgccacatatctcaaaacagggtccaaaattgctgtttcttaaagataaggggtaaaaattg 414  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30666029 tttgctaagaagacaccacatatctcaaaacagggtccaaagttgctgtttcttaaagataaggggtaaaaattg 30665955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 2373280 - 2373332
Alignment:
Q  248 ttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 300  Q
    |||||| ||||||||||||||||| ||| ||||||||||| | ||||| ||||    
T  2373280 ttttggccccttaacttttaaaaagttgtgattttggccccctaacaaaaaaa 2373332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 16233748 - 16233704
Alignment:
Q  258 ttaacttttaaaaacttgcgattttggcccaccaacaagaaaata 302  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||    
T  16233748 ttaacttttaaaaagttgcgattttggccccctaacaaaaaaata 16233704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 29968418 - 29968386
Alignment:
Q  255 cccttaacttttaaaaacttgcgattttggccc 287  Q
    |||||||||||||||||||||| ||||||||||    
T  29968418 cccttaacttttaaaaacttgcaattttggccc 29968386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 368
Target Start/End: Complemental strand, 29822388 - 29822260
Alignment:
Q  239 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaatagcaatcttggcccccaacttaaagataaggggccaa 338  Q
    |||||||||||||| |||  ||| ||||||| |||| ||||||| |||| ||||||| |||||| |||| ||||||||  ||||||||||||| ||||||    
T  29822388 taaatgcacttttgatcctctaatttttaaagacttacgattttagccc-ccaacaataaaataacaattttggcccctgacttaaagataagaggccaa 29822290  T
Q  339 atttgctaagaagacgccacatatctcaaa 368  Q
    | ||| | |||||||||||||| |||||||    
T  29822289 aattgttgagaagacgccacatgtctcaaa 29822260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 19005872 - 19005820
Alignment:
Q  240 aaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 292  Q
    ||||||||||||||||||  || ||| | ||||||||||||||||||| ||||    
T  19005872 aaatgcacttttggtccccaaagtttcacaaacttgcgattttggccccccaa 19005820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 20869282 - 20869238
Alignment:
Q  256 ccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 300  Q
    ||||||||||||||||  |||||||||||||||| ||||| ||||    
T  20869282 ccttaacttttaaaaagatgcgattttggcccactaacaaaaaaa 20869238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 39573831 - 39573787
Alignment:
Q  243 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 287  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||    
T  39573831 tgcacttttggtcccctatctttttaaaagttgcgattttggccc 39573787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 10758794 - 10758746
Alignment:
Q  239 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 287  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  10758794 taaatacacttttggccccttaacttttaaaaagttgcgattttggccc 10758746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 50073601 - 50073560
Alignment:
Q  243 tgcacttttggtcccttaacttttaaaaacttgcgattttgg 284  Q
    |||||||||||||||||| ||||| |||| ||||||||||||    
T  50073601 tgcacttttggtcccttatctttttaaaagttgcgattttgg 50073560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 1186666 - 1186710
Alignment:
Q  243 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 287  Q
    ||||||||||| ||| |||||||| |||| |||||||||||||||    
T  1186666 tgcacttttggccccctaactttttaaaagttgcgattttggccc 1186710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 18021735 - 18021780
Alignment:
Q  239 taaatgcacttttggtcccttaacttttaaaaacttgcgattttgg 284  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  18021735 taaatgcacttttggtcccttaagttttcaaaacttgcaattttgg 18021780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 4002794 - 4002842
Alignment:
Q  239 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 287  Q
    |||||||||||||||  || |||||| |||||||||| |||||||||||    
T  4002794 taaatgcacttttggatccctaacttctaaaaacttgagattttggccc 4002842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 31214552 - 31214508
Alignment:
Q  239 taaatgcacttttggtcccttaacttttaaaaacttgcgattttg 283  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  31214552 taaatgcattttaggtcccttaacttttaaaaacttgcaattttg 31214508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 46719961 - 46719993
Alignment:
Q  255 cccttaacttttaaaaacttgcgattttggccc 287  Q
    ||||||||||||||||| |||||||||||||||    
T  46719961 cccttaacttttaaaaagttgcgattttggccc 46719993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 47113410 - 47113365
Alignment:
Q  255 cccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 300  Q
    ||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  47113410 cccttaacttttaaaaagttgcgattttggccccctaacaaaaaaa 47113365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 17490 - 17522
Alignment:
Q  255 cccttaacttttaaaaacttgcgattttggccc 287  Q
    |||||||||||||||||||||| ||||||||||    
T  17490 cccttaacttttaaaaacttgcaattttggccc 17522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 30928669 - 30928629
Alignment:
Q  243 tgcacttttggtcccttaacttttaaaaacttgcgattttg 283  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  30928669 tgcacctttgatcccttaacttttaaaaagttgcgattttg 30928629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University