View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_high_28 (Length: 238)
Name: NF13564_high_28
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 27150024 - 27149804
Alignment:
| Q |
1 |
tactccctccagtcctttataaaagagacaatttga--aaatcccacagaccaaggaatgatattttttctattaataattttaaaatactagttgatat |
98 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
27150024 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagaccaaggaaaggcattttttctattaataattttaaaatactagttgatat |
27149925 |
T |
|
| Q |
99 |
tccaaaaatatctttggactaaactactcataccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagttccaattca |
198 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27149924 |
tccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattca |
27149825 |
T |
|
| Q |
199 |
agcctcacaaacacgcctctc |
219 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
27149824 |
agcctcacaaacacgcctctc |
27149804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8435496 - 8435284
Alignment:
| Q |
1 |
tactccctccagtcctttataaaagagacaatttga--aaatcccacagaccaaggaatgatattttttctattaataattttaaaatactagttgatat |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8435496 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacacagactaaagaaatgtattttttctattaataattttaaaatactagttgatat |
8435397 |
T |
|
| Q |
99 |
tccaaaaatatctttggactaaactactcataccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagttccaattca |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8435396 |
tccaaaaatatccttggactaaactactcctaccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattca |
8435297 |
T |
|
| Q |
199 |
agcctcacaaaca |
211 |
Q |
| |
|
||||||||||||| |
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|
| T |
8435296 |
agcctcacaaaca |
8435284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 3804532 - 3804740
Alignment:
| Q |
13 |
tcctttataaaagagacaatttga--aaatcccacagaccaaggaatgatattttttctattaataattttaaaatactagttgatattccaaaaatatc |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3804532 |
tcctttataaaagagacaatttgagaaaatcacagagaccaaagaaaggtatcttttctattaataattttaaaatactagttgatatttcaaaaatatc |
3804631 |
T |
|
| Q |
111 |
tttggactaaactactcataccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagttccaattcaagcctcacaaac |
210 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
3804632 |
cttggactaaactacttctaccttacattccagctgcctacaattaatgtaattctatcattaaagctattgcatgagttccaatccaagcctcacaaac |
3804731 |
T |
|
| Q |
211 |
acgcctctc |
219 |
Q |
| |
|
||| ||||| |
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|
| T |
3804732 |
acgtctctc |
3804740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5165426 - 5165214
Alignment:
| Q |
1 |
tactccctccagtcctttataaaagagacaatttga--aaatcccacagaccaaggaatgatattttttctattaataattttaaaatactagttgatat |
98 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5165426 |
tactccctccggtcctttataaaagagacaatttgagaaaatcacaccgaccaaggaaatgtattttttctattaataattttaaaatactagttgatat |
5165327 |
T |
|
| Q |
99 |
tccaaaaatatctttggactaaactactcataccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagttccaattca |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5165326 |
tccaaaaatatccttggactaaactactcctacctta--------ctgcctacaattaatgtaattctatcattaaagctattgtatgagtatcaattca |
5165235 |
T |
|
| Q |
199 |
agcctcacaaacacgcctctc |
219 |
Q |
| |
|
|||||||||||||| |||||| |
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|
| T |
5165234 |
agcctcacaaacacacctctc |
5165214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3817804 - 3817767
Alignment:
| Q |
1 |
tactccctccagtcctttataaaagagacaatttgaaa |
38 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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|
| T |
3817804 |
tactccctccgatcctttataaaagagacaatttgaaa |
3817767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 31742897 - 31742696
Alignment:
| Q |
12 |
gtcctttataaaagagacaatttga--aaatcccacagaccaaggaatgatattttttctattaataattttaaaatactagttgatattccaaaaatat |
109 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31742897 |
gtcctttatagaagagacaatttgagaaaatcacacagaccaagaaaatgtattttttctattaataattttaaaatactagttgatattccaaaaatat |
31742798 |
T |
|
| Q |
110 |
ctttggactaaactactcataccttacattacagctgcctacaattaatgtaattctatcattaaagctattgtatgagttccaattcaagcctcacaaa |
209 |
Q |
| |
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| |||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31742797 |
ccttggactaaactactccttcctta--------ccgcctacaattaatgtaattctatcattaaagctattgtatgagtaccaattcaagcctcacaaa |
31742706 |
T |
|
| Q |
210 |
cacgcctctc |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
31742705 |
cacgcctctc |
31742696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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