View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_high_30 (Length: 236)
Name: NF13564_high_30
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 43460031 - 43460247
Alignment:
| Q |
4 |
aaacaacataatcttcattaaaaggcctaaacaggtctggcaaggtacaaaacaagcgctaggcactccccaaaaccatgacagaactaaacaacaacag |
103 |
Q |
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| T |
43460031 |
aaacaacataatcttcattaaaaggcctaaacaggtatggcaaggtacaaaacaagcactaggcactccccaaaaccatgacaaaactaaacaacagcag |
43460130 |
T |
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| Q |
104 |
aagcataacaggaaaaacaacaaaatgtgcccagaaaatgtttgaattaggggaggtggggtcatttcccagcgcggtggagtcattttccggtgcggtg |
203 |
Q |
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| T |
43460131 |
aagcataacaggaaaaaaaataaaatgtgctcagaaagtgtttgaattaggggaggtggggtcatttcccgacgcggtggagtcattttccagtgcggtg |
43460230 |
T |
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| Q |
204 |
gtcgccggagcaaattc |
220 |
Q |
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| T |
43460231 |
gtcgccggagcaaattc |
43460247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 32470082 - 32469891
Alignment:
| Q |
28 |
gcctaaacaggtctggcaaggtacaaaacaagcgctaggcactccccaaaaccatgacagaactaaacaacaacagaagcataacaggaaaaacaacaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||| |
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| T |
32470082 |
gcctaaacaggtctggcaaggtacaaaacaagcgctaggcactccccaaaaccatgacagaactaaacaatagcagaagcataacagaaaaaataacaaa |
32469983 |
T |
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| Q |
128 |
atgtgcccagaaaatgtttgaattaggggaggtggggtcatttcccagcgcggtggagtcattttccggtgcggtggtcgccggagcaaattc |
220 |
Q |
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| T |
32469982 |
atgtgcccagaaagtgtttgaatta-gggaggtggggtcatttcctagcgcggtggagtcattttccggtatggtggttgctggagcaaattc |
32469891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 32470118 - 32470085
Alignment:
| Q |
4 |
aaacaacataatcttcattaaaaggcctaaacag |
37 |
Q |
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| T |
32470118 |
aaacaacataatcttcattaaaaggcctaaacag |
32470085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 54749864 - 54749819
Alignment:
| Q |
175 |
gcgcggtggagtcattttccggtgcggtggtcgccggagcaaattc |
220 |
Q |
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| T |
54749864 |
gcgcggtggagtcattttccggcgcggtggttgccggagaaaattc |
54749819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 26287167 - 26287126
Alignment:
| Q |
179 |
ggtggagtcattttccggtgcggtggtcgccggagcaaattc |
220 |
Q |
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| T |
26287167 |
ggtggagtcattttccggcgcggtggtcgccggagaaaattc |
26287126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 1520581 - 1520536
Alignment:
| Q |
175 |
gcgcggtggagtcattttccggtgcggtggtcgccggagcaaattc |
220 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||| |||||| |
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| T |
1520581 |
gcgcggtggagtcattttccggcgcggaggtagccggagaaaattc |
1520536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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