View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13564_high_8 (Length: 538)

Name: NF13564_high_8
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13564_high_8
NF13564_high_8
[»] chr4 (21 HSPs)
chr4 (23-290)||(40184483-40184750)
chr4 (291-365)||(40184339-40184413)
chr4 (450-533)||(13267464-13267549)
chr4 (449-533)||(19720627-19720713)
chr4 (448-533)||(39010123-39010210)
chr4 (479-533)||(40721950-40722003)
chr4 (445-533)||(51377279-51377369)
chr4 (450-533)||(3222989-3223074)
chr4 (450-533)||(27001395-27001480)
chr4 (450-533)||(44368188-44368273)
chr4 (450-533)||(55267987-55268072)
chr4 (298-341)||(54512273-54512316)
chr4 (449-533)||(7037470-7037556)
chr4 (312-365)||(20281434-20281487)
chr4 (450-522)||(34259815-34259889)
chr4 (444-500)||(42178068-42178127)
chr4 (450-522)||(53662425-53662499)
chr4 (450-513)||(5208333-5208398)
chr4 (448-515)||(8680939-8681008)
chr4 (448-500)||(13389470-13389525)
chr4 (450-513)||(24235320-24235385)
[»] chr8 (11 HSPs)
chr8 (291-398)||(44251262-44251368)
chr8 (305-397)||(3234656-3234747)
chr8 (450-533)||(30927917-30928002)
chr8 (448-530)||(7129531-7129615)
chr8 (479-533)||(5924842-5924895)
chr8 (450-533)||(1065417-1065502)
chr8 (450-533)||(41273515-41273600)
chr8 (450-533)||(41293707-41293792)
chr8 (479-533)||(10344356-10344409)
chr8 (305-341)||(3813253-3813289)
chr8 (450-533)||(36064030-36064115)
[»] chr3 (18 HSPs)
chr3 (291-399)||(4549490-4549597)
chr3 (291-365)||(860856-860930)
chr3 (449-533)||(11327107-11327193)
chr3 (313-398)||(23308596-23308680)
chr3 (450-533)||(8254027-8254112)
chr3 (450-534)||(27162454-27162540)
chr3 (450-522)||(32931915-32931989)
chr3 (449-533)||(50879594-50879680)
chr3 (448-519)||(2482674-2482747)
chr3 (450-533)||(20714243-20714328)
chr3 (450-533)||(36818956-36819041)
chr3 (449-495)||(43441671-43441720)
chr3 (450-516)||(53932394-53932462)
chr3 (450-533)||(52454078-52454165)
chr3 (450-513)||(108431-108496)
chr3 (450-533)||(3069561-3069645)
chr3 (450-501)||(5398918-5398972)
chr3 (303-399)||(18365771-18365866)
[»] chr1 (23 HSPs)
chr1 (291-374)||(51043020-51043103)
chr1 (303-368)||(36632941-36633006)
chr1 (291-399)||(16299831-16299938)
chr1 (450-533)||(11097870-11097955)
chr1 (291-399)||(17063235-17063342)
chr1 (311-374)||(36632866-36632929)
chr1 (291-397)||(7015910-7016015)
chr1 (448-533)||(25995458-25995545)
chr1 (449-533)||(13813557-13813643)
chr1 (305-374)||(17064061-17064130)
chr1 (291-352)||(41463920-41463981)
chr1 (448-533)||(48871941-48872027)
chr1 (473-533)||(7078486-7078545)
chr1 (305-397)||(9026214-9026304)
chr1 (473-533)||(26547260-26547319)
chr1 (450-533)||(42256460-42256545)
chr1 (296-399)||(10556259-10556360)
chr1 (291-365)||(28033918-28033992)
chr1 (450-531)||(51193119-51193202)
chr1 (453-533)||(25130706-25130788)
chr1 (449-533)||(49699738-49699824)
chr1 (450-533)||(29489345-29489430)
chr1 (450-533)||(36669356-36669441)
[»] chr2 (20 HSPs)
chr2 (450-533)||(36909829-36909914)
chr2 (450-533)||(44484642-44484727)
chr2 (450-533)||(34144537-34144622)
chr2 (450-533)||(35171212-35171297)
chr2 (291-374)||(18318328-18318411)
chr2 (450-533)||(3196073-3196158)
chr2 (473-533)||(36383488-36383547)
chr2 (450-534)||(27307216-27307302)
chr2 (450-533)||(10687941-10688026)
chr2 (452-533)||(29611913-29611993)
chr2 (450-513)||(36435681-36435746)
chr2 (305-353)||(43305270-43305318)
chr2 (473-525)||(44085300-44085351)
chr2 (448-513)||(37257447-37257516)
chr2 (451-533)||(17826052-17826136)
chr2 (450-522)||(15283247-15283321)
chr2 (436-515)||(9695065-9695146)
chr2 (450-501)||(20534068-20534122)
chr2 (450-533)||(29168725-29168810)
chr2 (305-397)||(38623655-38623745)
[»] chr5 (16 HSPs)
chr5 (449-533)||(30574363-30574449)
chr5 (450-531)||(14914372-14914455)
chr5 (449-533)||(22920478-22920564)
chr5 (450-533)||(9594478-9594563)
chr5 (473-533)||(28501643-28501702)
chr5 (311-398)||(1422660-1422746)
chr5 (291-374)||(19264704-19264787)
chr5 (448-517)||(9599730-9599801)
chr5 (448-515)||(39788710-39788779)
chr5 (448-533)||(3263494-3263581)
chr5 (475-533)||(32379915-32379972)
chr5 (450-531)||(32634708-32634791)
chr5 (449-533)||(36416048-36416134)
chr5 (450-533)||(2050927-2051011)
chr5 (450-513)||(3634494-3634559)
chr5 (451-522)||(31025002-31025075)
[»] chr6 (11 HSPs)
chr6 (473-533)||(12501500-12501559)
chr6 (449-533)||(12500013-12500099)
chr6 (449-533)||(12507342-12507428)
chr6 (449-533)||(12508802-12508888)
chr6 (296-399)||(31636873-31636975)
chr6 (291-352)||(5583584-5583645)
chr6 (450-533)||(2056783-2056868)
chr6 (450-515)||(3339503-3339570)
chr6 (448-513)||(25995440-25995507)
chr6 (478-519)||(21210290-21210330)
chr6 (450-513)||(17417241-17417306)
[»] chr7 (13 HSPs)
chr7 (449-533)||(33050182-33050268)
chr7 (450-522)||(13437198-13437272)
chr7 (450-533)||(37149475-37149561)
chr7 (473-533)||(8326151-8326210)
chr7 (450-533)||(30864403-30864488)
chr7 (448-533)||(44175543-44175630)
chr7 (488-533)||(1790032-1790076)
chr7 (450-522)||(43079629-43079703)
chr7 (450-522)||(44511139-44511213)
chr7 (449-516)||(2347062-2347131)
chr7 (450-533)||(20406541-20406626)
chr7 (450-533)||(27164823-27164908)
chr7 (449-498)||(42118715-42118766)
[»] scaffold0026 (1 HSPs)
scaffold0026 (449-513)||(113624-113690)
[»] scaffold0011 (1 HSPs)
scaffold0011 (442-522)||(18587-18669)
[»] scaffold0004 (1 HSPs)
scaffold0004 (450-533)||(249128-249213)
[»] scaffold0085 (1 HSPs)
scaffold0085 (453-533)||(31286-31366)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 40184750 - 40184483
Alignment:
Q  23 aggaccagacaaggaggaatgttgagaaatagaaaaaatactctctttttgattgtggtaatcatgactatatccacccaacaagcactagagagtagat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  40184750 aggaccagacaaggaggaatgttgagaaatagaaaaaatactctctttttgattgtggtaatcatgactacatccacccaacaagcactagagagtagag 40184651  T
Q  123 accaattaacattttgccccaagattgaagcattttgttaaagataaataaagagctcttatacattgccttggtcaaatttgctttctttccattcacc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184650 accaattaacattttgccccaagattgaagcattttgttaaagataaataaagagctcttatacattgccttggtcaaatttgctttctttccattcacc 40184551  T
Q  223 atgctttttcccttgtgattatcttcttgtaaacaatagcggactagctaattaatacaagagtcatg 290  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  40184550 atgctttttcccttgtgattatgttcttgtaaacaatagcggactagctaattaatataagggtcatg 40184483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 40184413 - 40184339
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 365  Q
    |||| |||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  40184413 ttaaataataacttaaaaaggataatatatgtattcaaagttgtgtaatcattgcattaaatatttcttcttttg 40184339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 13267549 - 13267464
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||   ||||||| ||||| | ||||||||||||||| ||||||||||| |||||||| |||||||    
T  13267549 gagaaatgatatttgtacaaccattttgtgacaaattttggaaaactttctctcacat-actcacatgattttcttttcctctctct 13267464  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 19720713 - 19720627
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||||||| |||   |||||||| ||||||| ||||||||||| | |||||||||| || |||||||| |||||||    
T  19720713 tgagaaatgatatttgcacatccattttgtgacaacttttgaataactttctctctc-ttactcacataatattcttttcctctctct 19720627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 39010210 - 39010123
Alignment:
Q  448 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||| |||||||   |||||||| ||||  ||| ||||||||| || |||||| ||||||||||| ||||||||||    
T  39010210 ttgagaaatgatatttgtacaaccattttgtgacaactttttgacagctttctctctca-tactcaaatgatgttcttatcatctctct 39010123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 40722003 - 40721950
Alignment:
Q  479 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  40722003 aatttttggacaactttctctctcat-actcacatgatgttcttttcctctctct 40721950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 533
Target Start/End: Complemental strand, 51377369 - 51377279
Alignment:
Q  445 ttgttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||| ||||||||||||||| |||||||   |||||||| |||||  |||||||||||| || ||||||||||||| |||| || |||||||    
T  51377369 ttgtagagaaatgatatttgtacaaccaatttgtgacaacttttgtccaactttctctctca-tactcacatgatggtcttatcctctctct 51377279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 3222989 - 3223074
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || |||||||||||||   |||||||||||||    
T  3222989 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggctttttcatctctct 3223074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 27001480 - 27001395
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  27001480 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 27001395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 44368273 - 44368188
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||| |||||||||||||  || |||||||||||| |||| ||||||||||    
T  44368273 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctcttat-actcacatgatggtcttatcatctctct 44368188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 55268072 - 55267987
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||| |||||||| |||| || ||||||||||||| |||| || |||||||    
T  55268072 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttatctctca-tactcacatgatgatcttatcctctctct 55267987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 54512316 - 54512273
Alignment:
Q  298 atgacctaaaaagggtaatatatgcattcaaagttgtgtaatca 341  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    
T  54512316 atgacctaaaaagggtaatgtttacattcaaagttgtgtaatca 54512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 7037556 - 7037470
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||   |||||||| ||||| |||| |||||||| || ||||||| ||||| |||| || |||||||    
T  7037556 tgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttctctctca-tactcacgtgatggtcttatcttctctct 7037470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 20281487 - 20281434
Alignment:
Q  312 gtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 365  Q
    ||||||| |||||| ||| ||||||||||| |||||||||| |||| |||||||    
T  20281487 gtaatatttgcatttaaaattgtgtaatcaatgcattaaatgtttcatcttttg 20281434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 34259815 - 34259889
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||||| |||||||   |||||||| | ||||||||||||||||| || ||||||||| || |||||    
T  34259815 gagaaatgatatttgtacaaccattttgtgacaactgttgaacaactttctctctca-tactcacattatcttctt 34259889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 42178127 - 42178068
Alignment:
Q  444 tttgttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctc 500  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||| || ||||||||    
T  42178127 tttgttgagaaatgatatttgtacaatcattatgtgacaatttttgaataattttctctc 42178068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 53662499 - 53662425
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||||| ||||| ||   || |||||||||| ||||||||||||| || || |||||||||||||||    
T  53662499 gagaaatgatatttgtacaactattttgtaacaatttttgtacaactttctctctca-tattcacatgatgttctt 53662425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 5208398 - 5208333
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||||||    
T  5208398 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacat 5208333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 515
Target Start/End: Original strand, 8680939 - 8681008
Alignment:
Q  448 ttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 515  Q
    ||||||||||||||||| ||||||   |||||| | |||||| ||||||||||||| || |||||||||||    
T  8680939 ttgagaaatgatatttgtacaaccattatgtgatattttttggacaactttctctctca-tactcacatga 8681008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 500
Target Start/End: Complemental strand, 13389525 - 13389470
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat--gtgacaatttttg-aacaactttctctc 500  Q
    ||||||||||||||||| ||||||||  |||||||||||||  |||||||||||||    
T  13389525 ttgagaaatgatatttgaacaaccattggtgacaatttttgcgacaactttctctc 13389470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 24235320 - 24235385
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||| |||| ||   |||||||||||||| ||||||||||||| || |||||||||    
T  24235320 gagaaatgatatttgtacaatcaatttgtgacaatttttgtacaactttctctctca-tactcacat 24235385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 44251262 - 44251368
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 390  Q
    |||| |||||||| |||||   |||||| || ||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || |||||||| |||    
T  44251262 ttaaataatgacccaaaaaatataatatttgtattcaaagttgtgtaatcaatgcattaaatgtttcctcttttggcttaaaat-tttctcttttggctt 44251360  T
Q  391 ccttaacc 398  Q
    ||||||||    
T  44251361 ccttaacc 44251368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 3234747 - 3234656
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 397  Q
    |||||||||||||| |||||||||| ||||||||||| || ||||||   ||| || ||||| ||||| | || |||||||||||||||||||    
T  3234747 aaaaagggtaatatttgcattcaaaattgtgtaatcaatgaattaaaggcttcttcatttggcttaaagt-ttcctcttttgacttccttaac 3234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 30928002 - 30927917
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||||||||| ||||||||||||| || |||||| |||||| |||| || |||||||    
T  30928002 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctca-tactcatatgatggtcttatcctctctct 30927917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 530
Target Start/End: Original strand, 7129531 - 7129615
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctc 530  Q
    |||| |||| ||||||| ||||||||   ||||||| ||||| |||||||||||||||| |||||||||||| |||||||| ||||    
T  7129531 ttgataaataatatttgtacaaccattttgtgacaacttttggacaactttctctcaca-tactcacatgattttcttttcctctc 7129615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 5924842 - 5924895
Alignment:
Q  479 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||    
T  5924842 aatttttgtacaactttctctctcat-actcacatgatgttcttttcatatctct 5924895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 1065417 - 1065502
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  1065417 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 1065502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 41273515 - 41273600
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  41273515 gagaaatgatatttgtacaaacaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 41273600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 41293792 - 41293707
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||  |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  41293792 gagaaatgatatttttacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcttctctct 41293707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 10344356 - 10344409
Alignment:
Q  479 aatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||||||||||| ||| |||||||||||| ||||||| |||||||    
T  10344356 aatttttggacaactttctctctcat-actcacatgatgctcttttcctctctct 10344409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 3813253 - 3813289
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatca 341  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  3813253 aaaaatggtaatatttgcattcaaagttgtgtaatca 3813289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 36064030 - 36064115
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| |||   ||||||| ||||| |||| |||||||| ||| ||||||||||  ||||| ||||||||||    
T  36064030 gagaaatgatatttgtacaatcattttgtgacaacttttggacaattttctctctcat-actcacatgacattcttatcatctctct 36064115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 4549597 - 4549490
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 390  Q
    |||| |||||||| ||||||| |||||| ||||||||||||||||| || | |||||| |||| || ||||||| | ||||||| || ||||||||||||    
T  4549597 ttaaataatgacccaaaaaggttaatatttgcattcaaagttgtgttattaatgcattgaatactttctcttttagcttaaaat-tttctcttttgactt 4549499  T
Q  391 ccttaacca 399  Q
    |||||||||    
T  4549498 ccttaacca 4549490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 860930 - 860856
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 365  Q
    |||| |||||||||||||| |||||| | |||||||||||||||||||| | |  ||||||||||| ||||||||    
T  860930 ttaaataatgacctaaaaatggtaatgtttgcattcaaagttgtgtaataaatatattaaatattttctcttttg 860856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 11327107 - 11327193
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  11327107 tgagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 11327193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 23308596 - 23308680
Alignment:
Q  313 taatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacc 398  Q
    |||||| | |||||||| ||||||||||| ||||||||||| |||||||||||  | ||||||||  |||||| ||||||||||||    
T  23308596 taatatttacattcaaaattgtgtaatcaatgcattaaatacttcctcttttgactaaaaatatt-atcttttaacttccttaacc 23308680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 8254027 - 8254112
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||   ||||||| ||| | ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  8254027 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctcat-actcacatgatggtcttatcatctctct 8254112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 27162540 - 27162454
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctctc 534  Q
    ||||| ||||||||| ||||||||   || |||| ||||||||||||||||||| || ||||||||||||||| || || ||||||||    
T  27162540 gagaagtgatatttgtacaaccattttgtaacaacttttgaacaactttctctctca-tactcacatgatgttgttatcctctctctc 27162454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 32931989 - 32931915
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| ||||    
T  32931989 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtctt 32931915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 50879594 - 50879680
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| ||||| |   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  50879594 tgagaaatgatatttgtacaactaaattgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcttctctct 50879680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 519
Target Start/End: Complemental strand, 2482747 - 2482674
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgtt 519  Q
    ||||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||| || || ||||||||||||    
T  2482747 ttgagaaatgatatttgtacatccattttgtgacaacttttgaacaactttctctctca-taatcacatgatgtt 2482674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 20714243 - 20714328
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  20714243 gagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 20714328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 36818956 - 36819041
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||| ||| |||| || |||||||    
T  36818956 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatcatggtcttatcctctctct 36819041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 43441671 - 43441720
Alignment:
Q  449 tgagaaatgatatttgcacaaccat---gtgacaatttttgaacaacttt 495  Q
    |||||||||||||||| ||||||||   ||||||||||||||||||||||    
T  43441671 tgagaaatgatatttgtacaaccattatgtgacaatttttgaacaacttt 43441720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 53932462 - 53932394
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgat 516  Q
    ||||||||||||||| ||||||||   ||||||||||||| ||||||||| ||| || ||||||||||||    
T  53932462 gagaaatgatatttgtacaaccattttgtgacaatttttggacaactttcactctca-tactcacatgat 53932394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 52454165 - 52454078
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacat-tactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| |||||  |||||||||||| ||| ||||||||||||| |||| || |||||||    
T  52454165 gagaaatgatatttgtacaatcaatttgtgacaacttttgttcaactttctctctcatatactcacatgatggtcttatcctctctct 52454078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 108431 - 108496
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||| || |||||||||    
T  108431 gagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctctca-tactcacat 108496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 3069645 - 3069561
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   ||||||||  |||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  3069645 gagaaatgatatttgtacaaccaatttgtgacaa-ctttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 3069561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 5398918 - 5398972
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctca 501  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||||    
T  5398918 gagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctca 5398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 18365866 - 18365771
Alignment:
Q  303 ctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacca 399  Q
    |||||||||||||||| | | ||||||||| |||||| | |||||||||   || ||||||||  || |||| || |||||||| ||||||||||||    
T  18365866 ctaaaaagggtaatatttaccttcaaagttatgtaataaatgcattaaaagctttctcttttgactt-aaattttcctcttttggcttccttaacca 18365771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 51043020 - 51043103
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 374  Q
    |||| |||| |||||||||||||||||| |  ||||||||||||||||||| ||||||||||| |||||||||||  |||||||    
T  51043020 ttaaataataacctaaaaagggtaatatttatattcaaagttgtgtaatcaatgcattaaatacttcctcttttgacttaaaat 51043103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 36632941 - 36633006
Alignment:
Q  303 ctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtt 368  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  36632941 ctaataagggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggtt 36633006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 16299938 - 16299831
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 390  Q
    |||| |||| ||| |||||||||||||| |||||||||| ||||||||||| || |||||||| || || |||||| ||||||| || ||| |||  |||    
T  16299938 ttaaataattacccaaaaagggtaatatctgcattcaaaattgtgtaatcaatgaattaaatactttcttttttggcttaaaat-ttcctcgtttagctt 16299840  T
Q  391 ccttaacca 399  Q
    |||||||||    
T  16299839 ccttaacca 16299831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 11097955 - 11097870
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||| ||||   ||||||| ||||||||||||||||||| || ||||||||| || |||||||| |||||||    
T  11097955 gagaaatgatatttgtacatccattttgtgacaacttttgaacaactttctctctca-tactcacataatattcttttcctctctct 11097870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 17063235 - 17063342
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 390  Q
    |||| ||||||||||| ||| ||||||| | ||||| |||||||  ||||| ||||||||||  ||| |||||||  ||||||| || ||||||||||||    
T  17063235 ttaaataatgacctaataagagtaatatttacattcgaagttgtagaatcaatgcattaaatgcttcatcttttgacttaaaat-ttcctcttttgactt 17063333  T
Q  391 ccttaacca 399  Q
     ||||||||    
T  17063334 acttaacca 17063342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 36632929 - 36632866
Alignment:
Q  311 ggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 374  Q
    |||||||| |||||||||||||||||||||| ||||||||||  ||| |||||| | |||||||    
T  36632929 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgattcatctttttgcttaaaat 36632866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 7016015 - 7015910
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgactt 390  Q
    |||| ||||||||  |||| || ||||| |||||||||| ||||||||||| ||||||||||  ||||||||| |  ||||||  || |||||||| |||    
T  7016015 ttaaataatgaccccaaaaaggaaatatttgcattcaaaattgtgtaatcaatgcattaaatgcttcctctttagacttaaaa-cttcctcttttggctt 7015917  T
Q  391 ccttaac 397  Q
    |||||||    
T  7015916 ccttaac 7015910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 25995458 - 25995545
Alignment:
Q  448 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  25995458 ttgagaaatgatatttgtacaatcaatttgtgacaagttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 25995545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 13813557 - 13813643
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||   |||||||| || || ||||||||||||| || ||||||||||||| |||| || |||||||    
T  13813557 tgagaaatgatatttgtacaaccaatttgtgacaacttctgtacaactttctctctca-tactcacatgatggtcttatcctctctct 13813643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 17064130 - 17064061
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 374  Q
    ||||||| |||||| |||||| ||||||  ||||||| ||||||||||||||  |||||||| |||||||    
T  17064130 aaaaaggataatatttgcatttaaagtttagtaatcaatgcattaaatattttttcttttggcttaaaat 17064061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 41463981 - 41463920
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaat 352  Q
    |||| |||||| | ||||||| |||||| ||||||||||||| |||||||| ||||||||||    
T  41463981 ttaaataatgatccaaaaaggataatatttgcattcaaagttatgtaatcaatgcattaaat 41463920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 48872027 - 48871941
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat--gtgacaa-tttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||| ||||| ||  ||||||| |||||| ||||||||||| | ||| |||||||||||||||||||| |||||||    
T  48872027 ttgagaaatgatatttgtacaactattcgtgacaactttttggacaactttctc-ctcat-actcacatgatgttcttttcctctctct 48871941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 533
Target Start/End: Complemental strand, 7078545 - 7078486
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||||||||||||||||| || ||||||||| || |||||||| |||||||    
T  7078545 tgtgacaacttttgaacaactttctctctca-tactcacataatattcttttcttctctct 7078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 9026304 - 9026214
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 397  Q
    ||||| |||||||| | |||| ||| ||||||||||| ||||||||||  ||| |||||||| ||||||| || ||||||||||||| |||||    
T  9026304 aaaaaaggtaatatttacatttaaa-ttgtgtaatcaatgcattaaatgcttcatcttttggcttaaaat-tttctcttttgacttcattaac 9026214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 26547260 - 26547319
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||||||||||||||| || || |||||| || |||||||| |||||||    
T  26547260 tgtgacaatttttgaacaactttctctctca-tattcacataatattcttttcttctctct 26547319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 42256460 - 42256545
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||| | ||||||||||||| || ||||||||||||| |||| || |||||||    
T  42256460 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctca-tactcacatgatggtcttatcctctctct 42256545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 10556360 - 10556259
Alignment:
Q  296 taatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttcctta 395  Q
    ||||||||  |||||||||| || ||||||||||||| || || || | ||||||||  |||||||||||  ||||||| ||  ||||||||||||||||    
T  10556360 taatgaccccaaaagggtaa-atctgcattcaaagttatgcaaccaatacattaaatgcttcctcttttgacttaaaat-ttcttcttttgacttcctta 10556263  T
Q  396 acca 399  Q
    ||||    
T  10556262 acca 10556259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 28033918 - 28033992
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttg 365  Q
    |||| |||||||  |||||| | ||||| |||||| ||||||||||||||| || |||||||  |||||||||||    
T  28033918 ttaaataatgactcaaaaagagcaatatttgcatttaaagttgtgtaatcaatgtattaaatgcttcctcttttg 28033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 531
Target Start/End: Complemental strand, 51193202 - 51193119
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 531  Q
    ||||||||||||||| ||| |||   | | |||||||||| ||||||||||||| || ||||||||||||| ||||||| |||||    
T  51193202 gagaaatgatatttgtacatccattttataacaatttttggacaactttctctctca-tactcacatgatgctcttttcctctct 51193119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 25130706 - 25130788
Alignment:
Q  453 aaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatgatcttatcctctctct 25130788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 49699824 - 49699738
Alignment:
Q  449 tgagaaatgatatttgcacaaccatgt---gacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||| |   || ||||||| ||||||||||| ||  || |||||||||||||||||||  |||||||    
T  49699824 tgagaaatgatatttgtacaaccattttatgataattttttaacaactttctttcttat-actcacatgatgttctttttctctctct 49699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 29489430 - 29489345
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   ||||| || ||| | ||||||||||||| || ||||||||||||| |||| || |||||||    
T  29489430 gagaaatgatatttgtacaaccattttgtgataactttggtacaactttctctctca-tactcacatgatggtcttatcctctctct 29489345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 36669441 - 36669356
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   ||||| |||||||| |||||||| |||| ||| |||||||||||||| || || |||||||    
T  36669441 gagaaatgatatttgtacaatcaatttgtgataatttttgtacaactttttctctcat-actcacatgatgtttttatcctctctct 36669356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 36909914 - 36909829
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||   ||||||| ||||| |||||||||||||||| |||||||||||| |||||||| |||||||    
T  36909914 gagaaatgatatttgtacaaccattttgtgacaacttttggacaactttctctcaca-tactcacatgattttcttttcctctctct 36909829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 44484727 - 44484642
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||   || |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  44484727 gagaaatgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcat-actcacatgatgttcttatcatctctct 44484642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 34144622 - 34144537
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||||||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  34144622 gagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 34144537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 35171297 - 35171212
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||   ||||||||||| | ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  35171297 gagaaatgatatttgtacaaccattttgtgacaattttggtacaactttctctctcat-actcacatgatggtcttatcatctctct 35171212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 18318411 - 18318328
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 374  Q
    |||| |||| ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||  ||  |||||||| |||||||    
T  18318411 ttaaataattacccaaaaagagtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctttatcttttggcttaaaat 18318328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 3196158 - 3196073
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcat-actcacatgatgatcttatcatctctct 3196073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 36383488 - 36383547
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  36383488 tgtgacaacttttgtacaactttctctctcat-actcacatgatgttcttatcatctctct 36383547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 27307302 - 27307216
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctctc 534  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || ||||||||    
T  27307302 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctctc 27307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 10687941 - 10688026
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||  ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  10687941 gagaaatgatatttgtacaaacaatttgtgacaacttttatacaactttctctctcat-actcacatgatggtcttatcatctctct 10688026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 29611993 - 29611913
Alignment:
Q  452 gaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||   |||||||||||||| ||||| |||||||   |||||||||||||||||| || |||||||    
T  29611993 gaaatgatatttgcataaccattttgtgacaatttttga-caactctctctca---tactcacatgatgttcttatcctctctct 29611913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 36435681 - 36435746
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||| |||||||   |||||||| |||| ||||||||||||||||| |||||||||    
T  36435681 gagaaatgatatttgtacaaccactttgtgacaactttttaacaactttctctcaca-tactcacat 36435746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 43305270 - 43305318
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaata 353  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||||    
T  43305270 aaaaaggataatatttgcatttaaagttgtgtaatcaatgcattaaata 43305318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 44085300 - 44085351
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttc 525  Q
    |||||||||||||| |||| ||||| |||||| ||||||||||||||||||||    
T  44085300 tgtgacaatttttggacaattttctatcacat-actcacatgatgttcttttc 44085351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 37257447 - 37257516
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat---gtgacaatttttg-aacaactttctctcacattactcacat 513  Q
    ||||||||||||||||| ||| ||||   ||||||| ||||| |||||||||||||| ||||||||||||    
T  37257447 ttgagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcattactcacat 37257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 17826052 - 17826136
Alignment:
Q  451 agaaatgatatttgcacaaccat--gtgacaattttt-gaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||| ||||||||  ||||||| |||| | | ||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  17826052 agaaatgatatttgtacaaccatttgtgacaacttttaggataactttctctctcat-actcatatgatgttctttttatctctct 17826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 15283321 - 15283247
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||||| |||||||   |||||||||||||  ||||||||||||| || ||||||||| || |||||    
T  15283321 gagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctctca-tactcacattatattctt 15283247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 9695146 - 9695065
Alignment:
Q  436 tataattctttgttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 515  Q
    ||||||| |||  |||||||||||||||| ||||||   ||| || |||||||| ||||||||||||| || |||||||||||    
T  9695146 tataattatttaatgagaaatgatatttgtacaaccattatgagataatttttggacaactttctctctca-tactcacatga 9695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 501
Target Start/End: Complemental strand, 20534122 - 20534068
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctca 501  Q
    |||||||||||||||||||||||   ||||| |||| |||||||| |||||||||    
T  20534122 gagaaatgatatttgcacaaccattttgtgataattgttgaacaattttctctca 20534068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 29168725 - 29168810
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   | |||||| ||||| ||||||||||||| || |||||||||||  ||||| | ||||||||    
T  29168725 gagaaatgatatttgtacaaccattttttgacaacttttgcacaactttctctctca-tactcacatgacattcttattatctctct 29168810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 38623655 - 38623745
Alignment:
Q  305 aaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaac 397  Q
    ||||||| |||||| |||||| ||||||||||||||| || |||||||  || || |||||| ||||||| || |||||||| |||| |||||    
T  38623655 aaaaaggataatatttgcatttaaagttgtgtaatcaatgaattaaatgctttct-ttttggcttaaaat-ttcctcttttggcttctttaac 38623745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 30574449 - 30574363
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| ||| |||||||||||| |||| ||||||||||    
T  30574449 tgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcat-actcacatgatggtcttatcatctctct 30574363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 531
Target Start/End: Original strand, 14914372 - 14914455
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 531  Q
    ||||||||||||||| |||||||   |||||||| ||||| |||||||||||| ||| || |||||||||||||||||| |||||    
T  14914372 gagaaatgatatttgtacaaccattttgtgacaacttttggacaactttctcttaca-tattcacatgatgttcttttcctctct 14914455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 22920564 - 22920478
Alignment:
Q  449 tgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||| ||||||| ||||||||   || |||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  22920564 tgagaaataatatttgtacaaccattttgtaacaaattttggacaactttctctctcat-actcacatgatgttcttatcatctctct 22920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 9594478 - 9594563
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  9594478 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 9594563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 28501643 - 28501702
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||    
T  28501643 tgtgacaatttttgtacaactttctctctca-tattcacatgatgttcttatcatctctct 28501702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 1422660 - 1422746
Alignment:
Q  311 ggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttccttaacc 398  Q
    |||||||| ||||||||||||||  |||||| |||||| |||  || ||||||||| ||||||| || |||||||| |||||||||||    
T  1422660 ggtaatatttgcattcaaagttggataatcaatgcattgaatgcttactcttttggcttaaaatctt-ctcttttggcttccttaacc 1422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 19264787 - 19264704
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaat 374  Q
    |||| |||||||  ||||| |||||| | ||||||||||||||  |||||| |||||||||||||| ||||||||  |||||||    
T  19264787 ttaaataatgactcaaaaatggtaatgtttgcattcaaagttggataatcaatgcattaaatattttctcttttgccttaaaat 19264704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 517
Target Start/End: Complemental strand, 9599801 - 9599730
Alignment:
Q  448 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatg 517  Q
    ||||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||||||||||    
T  9599801 ttgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcacatgatg 9599730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 448 - 515
Target Start/End: Complemental strand, 39788779 - 39788710
Alignment:
Q  448 ttgagaaatgatatttgcacaacc---atgtgacaatttttgaacaactttctctcacattactcacatga 515  Q
    ||||||||||||||||| ||||||   ||||||||| ||||| ||||||||||||| || |||||||||||    
T  39788779 ttgagaaatgatatttgtacaaccattatgtgacaacttttggacaactttctctctca-tactcacatga 39788710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 3263581 - 3263494
Alignment:
Q  448 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||| |||||||   |||||||| ||||| |||| ||| |||| || ||||||||||||| |||| || |||||||    
T  3263581 ttgagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttttctctca-tactcacatgatggtcttatcctctctct 3263494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 32379972 - 32379915
Alignment:
Q  475 tgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||| ||||||||||||||||||| || ||||||||||||||| || || |||||||    
T  32379972 tgacaacttttgaacaactttctctctca-tactcacatgatgttgttatcctctctct 32379915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 531
Target Start/End: Original strand, 32634708 - 32634791
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctct 531  Q
    ||||||||||||||| |||| ||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||    
T  32634708 gagaaatgatatttgtacaatcaatctgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctct 32634791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 36416134 - 36416048
Alignment:
Q  449 tgagaaatgatatttgcacaaccatgtg---acaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||| |    |||||||||  |||||||||||||||| ||||||||| || ||||| | ||||||||    
T  36416134 tgagaaatgatatttgtacaaccattttctaacaattttttgacaactttctctcaca-tactcacattatcttcttattatctctct 36416048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 2050927 - 2051011
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   ||| |||||||||| |||||||| ||||||| | ||||||| |||||| |||| |||||||    
T  2050927 gagaaatgatatttgtacaaccattttgtaacaatttttggacaactttatctcaca-tgctcacat-atgttcgtttcctctctct 2051011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 3634494 - 3634559
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||| |||||||||||||||   |||||||||||||  ||||||||||||| || |||||||||    
T  3634494 gagaaattatatttgcacaaccactttgtgacaatttttttacaactttctctctca-tactcacat 3634559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 522
Target Start/End: Complemental strand, 31025075 - 31025002
Alignment:
Q  451 agaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    |||||||||||||| |||||||   | ||||||||||| |||||||||||||| || ||||||||| || |||||    
T  31025075 agaaatgatatttgtacaaccacattatgacaattttttaacaactttctctctca-tactcacattatattctt 31025002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 12501500 - 12501559
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||    
T  12501500 tgtgacaatttttaaacaactttctctcaca-tacttatatgatgttcttttcatctctct 12501559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 12500099 - 12500013
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12500099 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12500013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 12507428 - 12507342
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12507428 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 12508802 - 12508888
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||||||||| ||   ||||||||||||| || |||||| ||||||| |||| | |||||||||||||| |||||||    
T  12508802 tgagaaatgatatttgcacaatcattttgtgacaatttttaaataactttttctcaca-tacttatatgatgttcttttcctctctct 12508888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 31636975 - 31636873
Alignment:
Q  296 taatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaatatttcctcttttggtttaaaatattgctcttttgacttcctta 395  Q
    |||| ||||| ||| |||||||| |||||| ||||||||||||| | | ||||||||| ||  ||||||||||||||||  | |||||||| ||| ||||    
T  31636975 taataacctacaaaaggtaatatttgcatttaaagttgtgtaattaatacattaaatactttttcttttggtttaaaat-gtcctcttttgcctttctta 31636877  T
Q  396 acca 399  Q
    ||||    
T  31636876 acca 31636873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 5583584 - 5583645
Alignment:
Q  291 ttaactaatgacctaaaaagggtaatatatgcattcaaagttgtgtaatcattgcattaaat 352  Q
    |||| |||| |||||||||  ||||||| |||| ||||||||||||||||| ||||||||||    
T  5583584 ttaaataataacctaaaaaatgtaatatttgcaatcaaagttgtgtaatcaatgcattaaat 5583645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 2056783 - 2056868
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||| || |||||||||| || ||||||||||||| |||| || |||||||    
T  2056783 gagaaatgatatttgtacaaccaatttgtgacaacttttgtactactttctctctca-tactcacatgatggtcttatcctctctct 2056868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 515
Target Start/End: Complemental strand, 3339570 - 3339503
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatga 515  Q
    ||||||||||||||| ||||||||   ||||||| ||||| ||||||||||||| || |||||||||||    
T  3339570 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatga 3339503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 513
Target Start/End: Original strand, 25995440 - 25995507
Alignment:
Q  448 ttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||||| |||||||   |||| ||||||||| ||||||||||||| || |||||||||    
T  25995440 ttgagaaatgatatttgtacaaccattttgtggcaatttttgtacaactttctctctca-tactcacat 25995507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 21210290 - 21210330
Alignment:
Q  478 caatttttgaacaactttctctcacattactcacatgatgtt 519  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  21210290 caatttttgaacaactttctctctca-tactcacatgatgtt 21210330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 513
Target Start/End: Complemental strand, 17417306 - 17417241
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacat 513  Q
    ||||||||||||||| |||| |||   ||||||||||||| ||||||||||||| || |||||||||    
T  17417306 gagaaatgatatttgtacaatcattatgtgacaatttttggacaactttctctctca-tactcacat 17417241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 33050182 - 33050268
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || ||||||||||||| |||| || |||||||    
T  33050182 tgagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctca-tactcacatgatggtcttatcctctctct 33050268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 13437198 - 13437272
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    |||||||||||||||||||||||   |||||||| |||||||||||||| |||| || |||||||||  |||||||    
T  13437198 gagaaatgatatttgcacaaccattttgtgacaacttttgaacaactttttctctca-tactcacattgtgttctt 13437272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 37149561 - 37149475
Alignment:
Q  450 gagaaatgatatttgcacaaccat--gtgacaa--tttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| ||||||||  |||||||  |||||  | ||||||||||| ||| ||||| ||||||||||||||||||||||    
T  37149561 gagaaatgatatttgtacaaccatttgtgacaacttttttagagaactttctctctcat-actcatatgatgttcttttcatctctct 37149475  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 533
Target Start/End: Original strand, 8326151 - 8326210
Alignment:
Q  473 tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||| |||| |||||||||||||  || ||||||||||||||||| ||||||||||    
T  8326151 tgtgacaatgtttgcacaactttctctctgat-actcacatgatgttcttatcatctctct 8326210  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 30864488 - 30864403
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||| ||||||||||||| || |||||| |||||| |||| || |||||||    
T  30864488 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctca-tactcatatgatggtcttatcctctctct 30864403  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 44175543 - 44175630
Alignment:
Q  448 ttgagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||| ||||||| |||| |||   |||| || ||||| ||||||||||||| ||| |||||||||||| | |||||||||||||    
T  44175543 ttgagaaataatatttgtacaatcattttgtgataacttttgtacaactttctctctcat-actcacatgatggttttttcatctctct 44175630  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Original strand, 1790032 - 1790076
Alignment:
Q  488 acaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  1790032 acaactttctctctcat-actcacatgatgttcttttcctctctct 1790076  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 43079703 - 43079629
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||||| |||||||   ||||| |||||||| ||||||||||||| || ||||||||| || |||||    
T  43079703 gagaaatgatatttgtacaaccactttgtgataatttttggacaactttctctctca-tactcacattatattctt 43079629  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 44511139 - 44511213
Alignment:
Q  450 gagaaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||||||||||| | ||||||||   ||||||| ||||| ||||||||||||  || ||||||||||||||||||    
T  44511139 gagaaatgatattcgtacaaccattttgtgacaacttttgtacaactttctctttca-tactcacatgatgttctt 44511213  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 516
Target Start/End: Complemental strand, 2347131 - 2347062
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgat 516  Q
    |||||||||||||||| |||||||   |||||||| ||| | ||||||||||||| || ||||||||||||    
T  2347131 tgagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctca-tactcacatgat 2347062  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 20406541 - 20406626
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||||||   |||||||| ||||  |||||||||| || || ||||||||||||||| || || |||||||    
T  20406541 gagaaatgatatttgtacaaccatcttgtgacaactttttgacaactttctttctca-tactcacatgatgtttttatcctctctct 20406626  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 27164908 - 27164823
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    ||||||||||||||| |||| ||   |||||||| ||||| | ||||||||||| ||| |||||||||||| |||| || |||||||    
T  27164908 gagaaatgatatttgtacaatcaatttgtgacaacttttgtataactttctctctcat-actcacatgatggtcttatcctctctct 27164823  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 42118766 - 42118715
Alignment:
Q  449 tgagaaatgatatttgcacaacca--tgtgacaatttttgaacaactttctc 498  Q
    |||||||||||||||| |||||||  |||||||||||||| |||||| ||||    
T  42118766 tgagaaatgatatttgtacaaccatttgtgacaatttttggacaactctctc 42118715  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 113624 - 113690
Alignment:
Q  449 tgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacat 513  Q
    |||||||||||||||| |||||||   |||||||| |||| ||||||||||||||||| |||||||||    
T  113624 tgagaaatgatatttgtacaaccactttgtgacaactttttaacaactttctctcaca-tactcacat 113690  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 18587 - 18669
Alignment:
Q  442 tctttgttgagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttctt 522  Q
    ||||| ||||||||||||||||| |||||||   ||||| || ||||| ||||||||||||| || ||||||||||||| ||||    
T  18587 tctttattgagaaatgatatttgtacaaccaatttgtgataacttttgtacaactttctctctca-tactcacatgatggtctt 18669  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 249213 - 249128
Alignment:
Q  450 gagaaatgatatttgcacaacca---tgtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||||||||||| ||   ||||| || ||||| ||||||||||||| || ||||||||||||| |||| |||| |||||    
T  249213 gagaaatgatatttgcacaatcaatttgtgataacttttgtacaactttctctctca-tactcacatgatggtcttatcatttctct 249128  T

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Target: scaffold0085 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 31366 - 31286
Alignment:
Q  453 aaatgatatttgcacaaccat---gtgacaatttttgaacaactttctctcacattactcacatgatgttcttttcatctctct 533  Q
    |||||||||||| ||||||||   || |||| ||||| ||||||||||||||   |||||||||||||||||| || |||||||    
T  31366 aaatgatatttggacaaccattttgtaacaacttttggacaactttctctca---tactcacatgatgttcttatcctctctct 31286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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