View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13564_low_1 (Length: 867)
Name: NF13564_low_1
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 1 - 855
Target Start/End: Original strand, 30455517 - 30456368
Alignment:
| Q |
1 |
tactcatccaagaggatttggtgggggatttgtgtttgatggaagatcgaggggtgaggtggaggttaatttggaggaaggagttgtttgagtgggaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
30455517 |
tactcatccaagaggagttggtgggggatttgtgtttgatggaagatcgaggggtgaggtggaggttattttagaggagggagttgtttgagtgggaaaa |
30455616 |
T |
|
| Q |
101 |
ggagcttgtggtagatcttttggttaggttggaggggagggcgatggggtttggtttggatgtgtgggtttggaaaccggacatatttggtgcattctcc |
200 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |
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|
| T |
30455617 |
ggagcatgcggtagatcttttggttaggttggaggggagggcgatggggtttggttcggatgtgtgggtttggaaactggacatagttggtggattctcc |
30455716 |
T |
|
| Q |
201 |
gtaaagtcttgttacaagttactcctcaattctattcatgttgcgactcctttggatgaggtggaaagggtgatttttcgggaaatttggatgtctaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
30455717 |
gtaaagtcttgttacaagttactcctcaattctattcatgttgcgactcctttggatgaggtggaaagggtgattttccgggaaatttggaggtctaagg |
30455816 |
T |
|
| Q |
301 |
ctctggctaaggtgttgggtttctcttggactatgttgcttgataggattccgacaaaaatcaatcttgctaagagaaatcttttgggggtggaggaatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30455817 |
ctctggctaaggtgttgggtttctcttggactatgttgcttgatcggattccgacaaaaatcaatcttgctaagaaaaatcttttgggggtggaggaatc |
30455916 |
T |
|
| Q |
401 |
taaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctttcttcattgtgagtgggtttcgaaagtttggtcggaggtgataaggtgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30455917 |
taaaaggtgtgtgttttgtgagggtggtgatgaatcgatgactcatctctttcttcattgtgagtgggtttcgaaagtttggtcggaggtgataaggtgg |
30456016 |
T |
|
| Q |
501 |
ttggattttacttttatcacgccgccgaatttatttgtccatgctttatgttggactagagaagtgggctcgaagaaattacgaagagcggcgtggttga |
600 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30456017 |
ttggattttacttttatcatgccgtcgaatttatttgtccatgctttatgttggactagagaagtgggctcgaagaaattacgaagagcggcgtggttga |
30456116 |
T |
|
| Q |
601 |
tttggcatgcggtggtgtggggggtttggaagtctaggaatgatagaattttcaatagcaagacttcagagacacaagaggtggtggatcgaatcaaagt |
700 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
30456117 |
tttggcatgcggtggtgtgaggggtttggaagtctaggaatgatagaattttcaatagcaagacttcagagacgcaagaggtggtggatcaaatcaaagt |
30456216 |
T |
|
| Q |
701 |
tct-gcgtggcaatggagtttggatagattgaagatagagacttgtttgttttacgtacgaatggtgttggaatccgcgtttttgtttgcgtggctaatc |
799 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
30456217 |
tctagcgtggcaatggagtttggatagattgaagatagagacttgtttattt----tacgaatggtgttggaatccgcatttttgtttgcgtggctaatc |
30456312 |
T |
|
| Q |
800 |
cggattatcgttccttggctgttttagagagctatcagttgtagggtgcacaggtt |
855 |
Q |
| |
|
| || ||||||||||||| ||| |||||||||| |||| |||||||||| |||||| |
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|
| T |
30456313 |
cagaatatcgttccttgggtgtgttagagagctgtcagctgtagggtgctcaggtt |
30456368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 632
Target Start/End: Original strand, 20988929 - 20988971
Alignment:
| Q |
590 |
ggcgtggttgatttggcatgcggtggtgtggggggtttggaag |
632 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
20988929 |
ggcgtggttgatttggcatgcggtggtttgggtggtttggaag |
20988971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 640
Target Start/End: Original strand, 21218455 - 21218504
Alignment:
| Q |
591 |
gcgtggttgatttggcatgcggtggtgtggggggtttggaagtctaggaa |
640 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
21218455 |
gcgtggatcatttggcatgcggtggtgtgggtggtttggaggtctaggaa |
21218504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 252 - 666
Target Start/End: Original strand, 5745633 - 5746046
Alignment:
| Q |
252 |
ttggatgaggtggaaagggtgatttttcgggaaatttggatgtctaaggctctggctaaggtgttgggtttctcttggactatgttgcttgataggattc |
351 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||||| ||| ||||| | ||| |||||||| | || || |||||| ||||||||||||| |||| |
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|
| T |
5745633 |
ttggatgaggtggaaaaagtgatctttcgagatatttggaggtccaaggcaccggcaaaggtgttagccttttcatggact-tgttgcttgatagaattc |
5745731 |
T |
|
| Q |
352 |
cgacaaaaatcaatcttgctaagagaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctt |
451 |
Q |
| |
|
| || || || |||||||| ||||||| ||| ||| ||| ||| |||||||||||||||||||||||||| | || || || |||| | |||||| || |
|
|
| T |
5745732 |
caacgaagattaatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttt |
5745831 |
T |
|
| Q |
452 |
tcttcattgtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttatttgtccatgctttatgt |
551 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| || ||| |||| |||||| | ||||||| ||||| ||||||||| | ||||| | | |
|
|
| T |
5745832 |
tcttcattgtagttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttatttcttcatgccatcggc |
5745931 |
T |
|
| Q |
552 |
tggactagagaagtgggctcgaagaaattacgaagagcggcgtggttgatttggcatgcggtggtgtggggggtttggaagtctaggaatgatagaattt |
651 |
Q |
| |
|
||| ||||||| ||| | || ||||| | | |||| || ||||||||||||||| ||||| ||||||| | |||||||||||||||| ||| |||| |
|
|
| T |
5745932 |
tggtctagagaggtgagatcaaagaagctgcatagaggggtgtggttgatttggcacgcggtagtgtgggtgatttggaagtctaggaacaatatgattt |
5746031 |
T |
|
| Q |
652 |
tcaatagcaagactt |
666 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
5746032 |
tcaataataagactt |
5746046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 252 - 666
Target Start/End: Original strand, 5782592 - 5783005
Alignment:
| Q |
252 |
ttggatgaggtggaaagggtgatttttcgggaaatttggatgtctaaggctctggctaaggtgttgggtttctcttggactatgttgcttgataggattc |
351 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||||| ||| ||||| | ||| |||||||| | || || |||||| ||||||||||||| |||| |
|
|
| T |
5782592 |
ttggatgaggtggaaaaagtgatctttcgagatatttggaggtccaaggcaccggcaaaggtgttagccttttcatggact-tgttgcttgatagaattc |
5782690 |
T |
|
| Q |
352 |
cgacaaaaatcaatcttgctaagagaaatcttttgggggtggaggaatctaaaaggtgtgtgttttgtgagggtggtgatgagtcgatgactcatctctt |
451 |
Q |
| |
|
| || || || |||||||| ||||||| ||| ||| ||| ||| |||||||||||||||||||||||||| | || || || |||| | |||||| || |
|
|
| T |
5782691 |
caacgaagattaatcttgcgaagagaagtctattgcgggaggatgaatctaaaaggtgtgtgttttgtgatgaaggggaagaatcgacaattcatctttt |
5782790 |
T |
|
| Q |
452 |
tcttcattgtgagtgggtttcgaaagtttggtcggaggtgataaggtggttggattttacttttatcacgccgccgaatttatttgtccatgctttatgt |
551 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| || ||| |||| |||||| | ||||||| ||||| ||||||||| | ||||| | | |
|
|
| T |
5782791 |
tcttcattgtagttgggtttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttatttcttcatgccatcggc |
5782890 |
T |
|
| Q |
552 |
tggactagagaagtgggctcgaagaaattacgaagagcggcgtggttgatttggcatgcggtggtgtggggggtttggaagtctaggaatgatagaattt |
651 |
Q |
| |
|
||| ||||||| ||| | || ||||| | | |||| || ||||||||||||||| ||||| ||||||| | |||||||||||||||| ||| |||| |
|
|
| T |
5782891 |
tggtctagagaggtgagatcaaagaagctgcatagaggggtgtggttgatttggcacgcggtagtgtgggtgatttggaagtctaggaacaatatgattt |
5782990 |
T |
|
| Q |
652 |
tcaatagcaagactt |
666 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
5782991 |
tcaataataagactt |
5783005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 795
Target Start/End: Original strand, 5746106 - 5746172
Alignment:
| Q |
725 |
agattgaagatagagacttgtttgttttacgtacgaatggtgttggaatccgcgtttttgtttgcgtggct |
795 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||| || || |||||||||| ||||| |
|
|
| T |
5746106 |
agattgaatatagagacttgtttgttt----tatgaatggtgttggaaccctcggttttgtttgcatggct |
5746172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 795
Target Start/End: Original strand, 5783065 - 5783131
Alignment:
| Q |
725 |
agattgaagatagagacttgtttgttttacgtacgaatggtgttggaatccgcgtttttgtttgcgtggct |
795 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||| || || |||||||||| ||||| |
|
|
| T |
5783065 |
agattgaatatagagacttgtttgttt----tatgaatggtgttggaaccctcggttttgtttgcatggct |
5783131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 655
Target Start/End: Complemental strand, 20040479 - 20040422
Alignment:
| Q |
598 |
tgatttggcatgcggtggtgtggggggtttggaagtctaggaatgatagaattttcaa |
655 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
20040479 |
tgatttggcatgcggtggtgtggagtatttggcgagctaggaatgatagaattttcaa |
20040422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 26490343 - 26490467
Alignment:
| Q |
296 |
taaggctctggctaaggtgttgggtttctcttggactatgttgcttgataggattccgacaaaaatcaatcttgctaagagaaatcttttgggggtggag |
395 |
Q |
| |
|
|||||| || |||||||| |||| ||| || |||||| | || |||||||||||||| ||||| | || ||||||||||||| ||||| ||||| ||| |
|
|
| T |
26490343 |
taaggcgctagctaaggttttggttttttcgtggactttattccttgataggattccaacaaaggtgaaccttgctaagagaaggcttttcggggttgag |
26490442 |
T |
|
| Q |
396 |
gaatctaaaaggtgtgtgttttgtg |
420 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
26490443 |
gaattgaagcggtgtgtgttttgtg |
26490467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 655
Target Start/End: Complemental strand, 3678462 - 3678401
Alignment:
| Q |
594 |
tggttgatttggcatgcggtggtgtggggggtttggaagtctaggaatgatagaattttcaa |
655 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| | |||||||||| |||||||| |
|
|
| T |
3678462 |
tggttgatttggcatgcggtggtatggacgatttggaaggcgcggaatgataggattttcaa |
3678401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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