View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_10 (Length: 513)
Name: NF13564_low_10
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 31904453 - 31904874
Alignment:
| Q |
8 |
cgaagaatattcggatgacgaagcttactcataattgaaatttcacgtttcacatgtgcagcgagtccagttgcggtgattttcttcttgttgatcactt |
107 |
Q |
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| T |
31904453 |
cgaacaatattcggatgacgaagcttactcataattgaaatttcacgtttcacatgtccagcgagtcctgttgcggagattttcttcttgttgatcactt |
31904552 |
T |
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| Q |
108 |
tcacagccacgctctgtccattctcggtgttccgcgcgtggtatactttcgcaaacgcgccacatcctaggagtttgccgagctcgtatttgccgaagag |
207 |
Q |
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| T |
31904553 |
tcacagccacgctctgtccattctcggtgttccgcgcgtggtatactttcgcaaacgcgccacatcctaggagttttccgagctcgtatttgccgaagag |
31904652 |
T |
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| Q |
208 |
tgcggtggtagcatctgccggagctggcgctgctgcctgttcgatatccgacattcgcggcggtggtggttgtttagatcgagctctctgtttgagagag |
307 |
Q |
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| T |
31904653 |
tgcggtggtagcatctgccggagctggcgctgctgcctgttcgatatccgacattcgcggtggtggtggttgtttagatcgagctctctgtttgagagag |
31904752 |
T |
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| Q |
308 |
cacgatcgatgaataacttgtttgggaaaatgcaaagattgtaaaagtgttaatcacttttttcagatatgggaattagtttatggttttttcttttgtt |
407 |
Q |
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| T |
31904753 |
cacgatcgatgaataacttgtttgggaaaatgcaaagattgtaaaagtgttaatcacttttttcagatatgggaattagtttatgg-tttttctgttgtt |
31904851 |
T |
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| Q |
408 |
gagaatatgctaaacttatgtag |
430 |
Q |
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| T |
31904852 |
gagaatatgctaaacttatgtag |
31904874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 31904897 - 31904937
Alignment:
| Q |
454 |
tattgttgagggtttggtggaagtttaatttgaaaggaagt |
494 |
Q |
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| T |
31904897 |
tattgttgaaggtttggtggaagtttaatttgaaaggaagt |
31904937 |
T |
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