View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13564_low_11 (Length: 500)

Name: NF13564_low_11
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13564_low_11
NF13564_low_11
[»] chr8 (5 HSPs)
chr8 (71-363)||(30666044-30666336)
chr8 (411-485)||(30665955-30666029)
chr8 (319-371)||(2373280-2373332)
chr8 (329-373)||(16233704-16233748)
chr8 (326-358)||(29968386-29968418)
[»] chr5 (4 HSPs)
chr5 (310-439)||(29822260-29822388)
chr5 (311-363)||(19005820-19005872)
chr5 (327-371)||(20869238-20869282)
chr5 (314-358)||(39573787-39573831)
[»] chr4 (3 HSPs)
chr4 (310-358)||(10758746-10758794)
chr4 (314-355)||(50073560-50073601)
chr4 (314-358)||(1186666-1186710)
[»] chr6 (2 HSPs)
chr6 (310-355)||(18021735-18021780)
chr6 (310-358)||(4002794-4002842)
[»] chr3 (2 HSPs)
chr3 (310-354)||(31214508-31214552)
chr3 (326-358)||(46719961-46719993)
[»] chr7 (1 HSPs)
chr7 (326-371)||(47113365-47113410)
[»] scaffold0302 (1 HSPs)
scaffold0302 (326-358)||(17490-17522)
[»] chr1 (1 HSPs)
chr1 (314-354)||(30928629-30928669)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 71 - 363
Target Start/End: Complemental strand, 30666336 - 30666044
Alignment:
Q  71 ttaatcaacacatcaccaataaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcg 170  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30666336 ttaatcaacacatcaccaacaaatgcatctttgagttggtggtgagtttggtgaaatcacagtatgtgattttgtttgaaattccaaagtttagctttcg 30666237  T
Q  171 acaaaatgaagtgacacactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacatt 270  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30666236 aaaaaatcaagtgacacactgtgtttccgctaaactcactagtcactatcaattcaaacatatgctaagtctgtttggatgaacaacttaattaaacatt 30666137  T
Q  271 caaaatataagagcctatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 363  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30666136 caaaatataagagcttatcaatataagtctctttatgtataaatgcacttttggtcccttaacttttaaaaacttgtgattttggcccaccaa 30666044  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 30666029 - 30665955
Alignment:
Q  411 tttgctaagaagacgccacatatctcaaaacagggtccaaaattgctgtttcttaaagataaggggtaaaaattg 485  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30666029 tttgctaagaagacaccacatatctcaaaacagggtccaaagttgctgtttcttaaagataaggggtaaaaattg 30665955  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 2373280 - 2373332
Alignment:
Q  319 ttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 371  Q
    |||||| ||||||||||||||||| ||| ||||||||||| | ||||| ||||    
T  2373280 ttttggccccttaacttttaaaaagttgtgattttggccccctaacaaaaaaa 2373332  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 16233748 - 16233704
Alignment:
Q  329 ttaacttttaaaaacttgcgattttggcccaccaacaagaaaata 373  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||    
T  16233748 ttaacttttaaaaagttgcgattttggccccctaacaaaaaaata 16233704  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 29968418 - 29968386
Alignment:
Q  326 cccttaacttttaaaaacttgcgattttggccc 358  Q
    |||||||||||||||||||||| ||||||||||    
T  29968418 cccttaacttttaaaaacttgcaattttggccc 29968386  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 29822388 - 29822260
Alignment:
Q  310 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaacaagaaaatagcaatcttggcccccaacttaaagataaggggccaa 409  Q
    |||||||||||||| |||  ||| ||||||| |||| ||||||| |||| ||||||| |||||| |||| ||||||||  ||||||||||||| ||||||    
T  29822388 taaatgcacttttgatcctctaatttttaaagacttacgattttagccc-ccaacaataaaataacaattttggcccctgacttaaagataagaggccaa 29822290  T
Q  410 atttgctaagaagacgccacatatctcaaa 439  Q
    | ||| | |||||||||||||| |||||||    
T  29822289 aattgttgagaagacgccacatgtctcaaa 29822260  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 19005872 - 19005820
Alignment:
Q  311 aaatgcacttttggtcccttaacttttaaaaacttgcgattttggcccaccaa 363  Q
    ||||||||||||||||||  || ||| | ||||||||||||||||||| ||||    
T  19005872 aaatgcacttttggtccccaaagtttcacaaacttgcgattttggccccccaa 19005820  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 20869282 - 20869238
Alignment:
Q  327 ccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 371  Q
    ||||||||||||||||  |||||||||||||||| ||||| ||||    
T  20869282 ccttaacttttaaaaagatgcgattttggcccactaacaaaaaaa 20869238  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 39573831 - 39573787
Alignment:
Q  314 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 358  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||    
T  39573831 tgcacttttggtcccctatctttttaaaagttgcgattttggccc 39573787  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 10758794 - 10758746
Alignment:
Q  310 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 358  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  10758794 taaatacacttttggccccttaacttttaaaaagttgcgattttggccc 10758746  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 50073601 - 50073560
Alignment:
Q  314 tgcacttttggtcccttaacttttaaaaacttgcgattttgg 355  Q
    |||||||||||||||||| ||||| |||| ||||||||||||    
T  50073601 tgcacttttggtcccttatctttttaaaagttgcgattttgg 50073560  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 1186666 - 1186710
Alignment:
Q  314 tgcacttttggtcccttaacttttaaaaacttgcgattttggccc 358  Q
    ||||||||||| ||| |||||||| |||| |||||||||||||||    
T  1186666 tgcacttttggccccctaactttttaaaagttgcgattttggccc 1186710  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 18021735 - 18021780
Alignment:
Q  310 taaatgcacttttggtcccttaacttttaaaaacttgcgattttgg 355  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||    
T  18021735 taaatgcacttttggtcccttaagttttcaaaacttgcaattttgg 18021780  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 4002794 - 4002842
Alignment:
Q  310 taaatgcacttttggtcccttaacttttaaaaacttgcgattttggccc 358  Q
    |||||||||||||||  || |||||| |||||||||| |||||||||||    
T  4002794 taaatgcacttttggatccctaacttctaaaaacttgagattttggccc 4002842  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 31214552 - 31214508
Alignment:
Q  310 taaatgcacttttggtcccttaacttttaaaaacttgcgattttg 354  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  31214552 taaatgcattttaggtcccttaacttttaaaaacttgcaattttg 31214508  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 46719961 - 46719993
Alignment:
Q  326 cccttaacttttaaaaacttgcgattttggccc 358  Q
    ||||||||||||||||| |||||||||||||||    
T  46719961 cccttaacttttaaaaagttgcgattttggccc 46719993  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 47113410 - 47113365
Alignment:
Q  326 cccttaacttttaaaaacttgcgattttggcccaccaacaagaaaa 371  Q
    ||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  47113410 cccttaacttttaaaaagttgcgattttggccccctaacaaaaaaa 47113365  T

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Target: scaffold0302 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 17490 - 17522
Alignment:
Q  326 cccttaacttttaaaaacttgcgattttggccc 358  Q
    |||||||||||||||||||||| ||||||||||    
T  17490 cccttaacttttaaaaacttgcaattttggccc 17522  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 30928669 - 30928629
Alignment:
Q  314 tgcacttttggtcccttaacttttaaaaacttgcgattttg 354  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  30928669 tgcacctttgatcccttaacttttaaaaagttgcgattttg 30928629  T

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