View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_15 (Length: 463)
Name: NF13564_low_15
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_15 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 24494169 - 24494617
Alignment:
| Q |
11 |
catcatcattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24494169 |
catcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattactggcaacaacaaccatgcaattgctaa |
24494268 |
T |
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| Q |
111 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494269 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
24494368 |
T |
|
| Q |
211 |
ctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttacta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494369 |
ctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttacta |
24494468 |
T |
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| Q |
311 |
aatctgatggcgcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgt |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24494469 |
aatctgatggcgcaagtgtagcagatagtacggaatacagaagcgtcataggggctctacaatatttttccatgacaaggcctgacatagcctacactgt |
24494568 |
T |
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| Q |
411 |
aaataagcttgcacaattcatgcaacatccatcatctacacactttaca |
459 |
Q |
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| T |
24494569 |
aaataagcttgcacaattcatgcaacatccatcatctacacactttaca |
24494617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 93519 - 93967
Alignment:
| Q |
11 |
catcatcattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93519 |
catcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaacaaccatgcaattgctaa |
93618 |
T |
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| Q |
111 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93619 |
gtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcctactactcaaggattattt |
93718 |
T |
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| Q |
211 |
ctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttacta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93719 |
ctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttacta |
93818 |
T |
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| Q |
311 |
aatctgatggcgcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgt |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
93819 |
aatctgatggcgcaagtgaagcagatagtacggaatacagaagcgtcataggggctctacaatatttgtccatgacaaggcctgacatagcctacactgt |
93918 |
T |
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| Q |
411 |
aaataagcttgcacaattcatgcaacatccatcatctacacactttaca |
459 |
Q |
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||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
93919 |
aaataagtttgcacagttcatgcaatatccatcatctacacactttaca |
93967 |
T |
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