View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_17 (Length: 457)
Name: NF13564_low_17
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 241 - 438
Target Start/End: Complemental strand, 42518444 - 42518250
Alignment:
| Q |
241 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaataata |
340 |
Q |
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| T |
42518444 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaata--- |
42518348 |
T |
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| Q |
341 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttg |
438 |
Q |
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| T |
42518347 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagacaaatcctccctaaagttctttttattatcatatatagtttg |
42518250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 42518810 - 42518666
Alignment:
| Q |
10 |
gatggacatcatcaacttttgaataatttgatattgtagaaattgatgctagttgagataaatttttactataatttacgataaattgagtagtaacgta |
109 |
Q |
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| T |
42518810 |
gatggacataatcaacttttgaataatttgatattgtagaaattgatgctagttgagatagatttttactataatttacgataaattgagtagtaacgta |
42518711 |
T |
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| Q |
110 |
actagtaagtaggctgatgatgtacttttacaacatttgttttct |
154 |
Q |
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| T |
42518710 |
aatagtaagtaggctgatgatgtacttttacaacatttgttttct |
42518666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 187 - 436
Target Start/End: Complemental strand, 42509087 - 42508832
Alignment:
| Q |
187 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaa-----------ttagtataatactcatcaaattaattaattgaaatctaaacaatcg |
275 |
Q |
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| T |
42509087 |
cacaagagagaattaatgtgtcgaattaagtgtgcataatgaaattatactacattagt-tatttctcatcaaattaattaattgaaatctaaacaatcg |
42508989 |
T |
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| Q |
276 |
tgtacctatgaaaaaa------tcttaacaatctaaggaatgataatatcaacaaaatggaaccaataatagtccaaactctaaagggttcattttctga |
369 |
Q |
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| T |
42508988 |
tgtacttaaaaaaaaaaaaaaatcttaacaatataaggaatgataatatcaacaaaatggagccaacagt----------ctaaatggttcattttctga |
42508899 |
T |
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| Q |
370 |
tgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtt |
436 |
Q |
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| T |
42508898 |
tacatcaagaaggatgtaatgaaaagccaaatcctcccaaaagttctttttactatcatgtatagtt |
42508832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 42509411 - 42509329
Alignment:
| Q |
26 |
ttttgaataatttgatattgtagaaattgatgctagttgagata-aattt--ttactataatttacgataaattgagtagtaa |
105 |
Q |
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| T |
42509411 |
ttttgaataatttgatattgtagaaattgatgctagttgagatagaattttattactataatttgcgataatttgagtagtaa |
42509329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 42518533 - 42518478
Alignment:
| Q |
187 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
242 |
Q |
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| T |
42518533 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
42518478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 42509305 - 42509237
Alignment:
| Q |
127 |
tgatgtacttttacaacatttgttttcttaaacat-cagatactcgt---agagtacaactcaacacaa |
191 |
Q |
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| T |
42509305 |
tgatgtacttttacaacgtttgttttcttaaacatactgaaactcgtagaagagtacaactcaacacaa |
42509237 |
T |
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