View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_19 (Length: 420)
Name: NF13564_low_19
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 55337810 - 55338196
Alignment:
| Q |
10 |
cacagagaagaaaagaaaaaatacactcagattaatcgttcatgttcatccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctg |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55337810 |
cacagagaagaaaaggaaaaatacactcagattaatcgttcatgttcatccaccgtcgtcttccccaaagcatccacactcaaaagaagacatcaagctg |
55337909 |
T |
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| Q |
110 |
ctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggattcgtacgaatactgaacaggacttatttattaataaaactttgggaataat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55337910 |
ctgccaggatcgtgtacttctgataccagttgatagaaccttgtaagattcgtactaatactgaacaggacttatttattaataaaactctgggaataat |
55338009 |
T |
|
| Q |
210 |
ccttccttttgagttggttatgcattgaaaacagaaaatacaaatgacattgaaggaggaaagggaattgctgtgaacttccacaaactgctaggaaaca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55338010 |
ccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaaattgaaggaggaaagggaattgctgtgaacttccacaaactgctaggaaaca |
55338109 |
T |
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| Q |
310 |
aggagcctagtcttttccaaccaaccagttactagtacaaaataaccgaatgccacctgctctcccttactctatttaaaacatacaactaaat |
403 |
Q |
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| T |
55338110 |
aggagcctagtcttttccaaccaaccagtt-------caaaataaccgaatgccacctgctctcccttactctatttaaaacatacaactaaat |
55338196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 59 - 403
Target Start/End: Complemental strand, 43600561 - 43600217
Alignment:
| Q |
59 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
158 |
Q |
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| T |
43600561 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43600462 |
T |
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| Q |
159 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600461 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
43600362 |
T |
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| Q |
259 |
ttgaaggaggaaagggaattgctgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
358 |
Q |
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| T |
43600361 |
ttgaaggaggaaagggaattgttgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
43600262 |
T |
|
| Q |
359 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600261 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
43600217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 59 - 403
Target Start/End: Complemental strand, 43606053 - 43605709
Alignment:
| Q |
59 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
158 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606053 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43605954 |
T |
|
| Q |
159 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605953 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
43605854 |
T |
|
| Q |
259 |
ttgaaggaggaaagggaattgctgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
358 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605853 |
ttgaaggaggaaagggaattgttgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
43605754 |
T |
|
| Q |
359 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605753 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
43605709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 59 - 403
Target Start/End: Complemental strand, 43611545 - 43611201
Alignment:
| Q |
59 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611545 |
ccaccgtcgtcttcccaaaagcatccacactcaaaagaagacatcaagctgctgccaggatcgtgtacttctgataccagttgatagaaccttgtaggat |
43611446 |
T |
|
| Q |
159 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611445 |
tcgtacgaatactgaacaggacttatttattaataaaactttgggaataatccttccttttgagttggttatgcattgaaaacagaaaatacaaatgaca |
43611346 |
T |
|
| Q |
259 |
ttgaaggaggaaagggaattgctgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
358 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611345 |
ttgaaggaggaaagggaattgttgtgaacttccacaaactgctaggaaacaaggagcctagtcttttccaaccaaccagttactagtacaaaataaccga |
43611246 |
T |
|
| Q |
359 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611245 |
atgccacctgctctcccttactctatttaaaacatacaactaaat |
43611201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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