View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13564_low_2 (Length: 852)
Name: NF13564_low_2
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 681; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 6 - 835
Target Start/End: Original strand, 46995935 - 46996768
Alignment:
| Q |
6 |
tggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgagga |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46995935 |
tggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgtaagaatgagga |
46996034 |
T |
|
| Q |
106 |
tcttcggattttttagtaacaaaacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagtttgtcaatgaaatgttgttggt |
205 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46996035 |
tcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagtttgtcaatgaaatgctgttggt |
46996134 |
T |
|
| Q |
206 |
ttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttga |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996135 |
ttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttga |
46996234 |
T |
|
| Q |
306 |
gtcttcaattggagaataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttagatgtgtgttgtagcacagagagatctc |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996235 |
gtcttcaattggaggataaggtttgataaagcattcagaaacgagttttaaacaatgggtgctcatcatttagatgtgtgttgtagcacagagagatctc |
46996334 |
T |
|
| Q |
406 |
gtttcttatgaagaca---nnnnnnnnaactattcttatgatgatgataaaaagagtcggctgccaaaattgaataagaaagaaggttcgtcgaagttgt |
502 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996335 |
gtttcttatgaagacatttttttttttaactattcttatgatgatgataaaaagagtcggctgccaaaattgaataagaaagaaggttcgtcgaagttgt |
46996434 |
T |
|
| Q |
503 |
tgtgagtagaacgtgaatcccacccaaaaaaggaataaccacctaccctgcnnnnnnnnnnnnnnntccaccctgcttttattattgcttaatttttaaa |
602 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46996435 |
tgtgagtagaacgtgaatcccactcaaaaaaggaataaccacctaccctgctttttttaaagaaaatccaccctgcttttattattgcttaatttttaaa |
46996534 |
T |
|
| Q |
603 |
tatagattcaacaaaatgaggatcaaatgttcatctatcattgccacatacacataatagatgcagggtgataatacattagaacctatagcacctattg |
702 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46996535 |
tatagattcaacaaaatgaggatcaaatgttcatctatcattgccacatacacatgatagatgcagggtgataatacattagaacctatagcacctattg |
46996634 |
T |
|
| Q |
703 |
ctgaaatcacagcttaaaaatgttaactgaaatgtgaagtattggtccgctaatgtaaaatgtgacggccacatttcatcagg-aaaagnnnnnnnnnnc |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
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| T |
46996635 |
ctgaaatcacagcttaaaaatgttaactgaaatgtgaagtattggtccgctaatgtaaaatgtgacggccacatttcgtcaggaaaaaaaaaaaaaacac |
46996734 |
T |
|
| Q |
802 |
atttagatcaatgaaatcttcttgatggttattt |
835 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46996735 |
atttagatcaatgaaatcttcttgatggttattt |
46996768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 7 - 347
Target Start/End: Original strand, 46998184 - 46998539
Alignment:
| Q |
7 |
ggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggat |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| | |
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|
| T |
46998184 |
ggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgtaaaaatgagggt |
46998283 |
T |
|
| Q |
107 |
cttcggattttttagtaacaaaacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagt------------ttgtcaatgaa |
194 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| || || ||||| |
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|
| T |
46998284 |
cttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttcagtttctctaccaagttctctatgaa |
46998383 |
T |
|
| Q |
195 |
atgttgttggtttag---tgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatag |
291 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||||||| ||||||| ||||| | ||||| |||||| ||||||||||||| |||||||| |
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| T |
46998384 |
atgttgtttgtttagtgatgatgatgttggttttttgaagagaagacccttttgaatatagtatgcagataacatgctaatatcccaaggtcctaaatag |
46998483 |
T |
|
| Q |
292 |
caaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaac |
347 |
Q |
| |
|
|| ||||| ||||||||||| ||||| | | | ||||||||||| ||||||||||| |
|
|
| T |
46998484 |
catatttggtttgagtcttcgattgggggacatggtttgataaaacattcagaaac |
46998539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 46981117 - 46981465
Alignment:
| Q |
16 |
atatcattgatggtaatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggatcttcggatt |
115 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
46981117 |
atatcatttatggtgatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttcggatt |
46981216 |
T |
|
| Q |
116 |
ttttagtaacaaaacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagt------------ttgtcaatgaaatgttgttg |
203 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || || |||||||||||||| |
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|
| T |
46981217 |
ttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaagggagtgtttcagtttctccaccaggttctctatgaaatgttgttg |
46981316 |
T |
|
| Q |
204 |
gtttag---tgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgc |
300 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||| |||||||| |||||| | ||| |||||| ||||||||||| ||| |||||| || ||||| |
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|
| T |
46981317 |
gtttagtgatgatgatgttggttttttgaagataagtcccttttggttataatgtgtagataacatggcaatatcccaatgtgttaaataacatatttga |
46981416 |
T |
|
| Q |
301 |
tttgagtcttcaattggagaataaggtttgataaagcattcagaaacga |
349 |
Q |
| |
|
|||||||||| |||| | ||||||||| ||||| ||| |||||||| |
|
|
| T |
46981417 |
tttgagtctttgattgtgggataaggtttaataaaacatgaagaaacga |
46981465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 5 - 347
Target Start/End: Original strand, 46975119 - 46975473
Alignment:
| Q |
5 |
ctggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgagg |
104 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
46975119 |
ctggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgtaagaatgagg |
46975218 |
T |
|
| Q |
105 |
atcttcggattttttagtaacaaaacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagtttg------------tcaatg |
192 |
Q |
| |
|
||||| |||||||||||||||| |||||| || |||||||| |||| ||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
46975219 |
gtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagtttgtccactaggttctcaatg |
46975318 |
T |
|
| Q |
193 |
aaatgttgttggtttagtgatgaagttggttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagc |
292 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | | ||| |||||| ||||||||||| ||| || ||||| |
|
|
| T |
46975319 |
aagtgttgttggtttagtgatgatgttggtttcttgaagagaagtcccttttggatatagtgtgtagataacatggcaatatcccaatgtgttagatagc |
46975418 |
T |
|
| Q |
293 |
aaatttgctttgagtcttcaattggagaataaggtttgataaagcattcagaaac |
347 |
Q |
| |
|
| ||||| |||||||||| || || | ||||||||| ||||| ||| ||||||| |
|
|
| T |
46975419 |
atatttggtttgagtctttgatagggggataaggtttaataaaacatgcagaaac |
46975473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 47001876 - 47002005
Alignment:
| Q |
7 |
ggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacaaaaacagtgtaagaatgaggat |
106 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47001876 |
ggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggat |
47001975 |
T |
|
| Q |
107 |
cttcggattttttagtaacaaaacgacctg |
136 |
Q |
| |
|
|||| ||||||| |||||||| | |||||| |
|
|
| T |
47001976 |
cttcagatttttgagtaacaagaagacctg |
47002005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 47002008 - 47002133
Alignment:
| Q |
222 |
ttttttgaagagaagggccttttggatataattcgcagacaacatgacaatatcccaaggtgctaaatagcaaatttgctttgagtcttcaattggagaa |
321 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | ||| | |||| |||||||||||||| |||||||||| ||||| ||||||||||| ||||| | | |
|
|
| T |
47002008 |
ttttttgaagagaagtcccttttggatatagtgtgaagatatcatggcaatatcccaaggtcctaaatagcatatttggtttgagtcttcgattggggga |
47002107 |
T |
|
| Q |
322 |
taaggtttgataaagcattcagaaac |
347 |
Q |
| |
|
|| |||||||| || ||||||||||| |
|
|
| T |
47002108 |
tatggtttgatgaaacattcagaaac |
47002133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 612
Target Start/End: Original strand, 46999571 - 46999604
Alignment:
| Q |
579 |
ttttattattgcttaatttttaaatatagattca |
612 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
46999571 |
ttttattattgcttaatttctaaatatagattca |
46999604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 782
Target Start/End: Original strand, 47004521 - 47004582
Alignment:
| Q |
721 |
aatgttaactgaaatgtgaagtattggtccgctaatgtaaaatgtgacggccacatttcatc |
782 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
47004521 |
aatgttaattgaaatgtgaagaattggtcagctcatgtagaattagacggccacgtttcatc |
47004582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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