View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_23 (Length: 331)
Name: NF13564_low_23
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 41626272 - 41625967
Alignment:
| Q |
8 |
ccaagaatattcatctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatata |
107 |
Q |
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| T |
41626272 |
ccaagaatattcatctgattaggaaaactttgatgaatcaactaaaacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatata |
41626173 |
T |
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| Q |
108 |
tttgataacggcaagaaaataagattcataaaactaaatagccgactctattttggatgataataatgattttgatatttagaatagaacaatgaagaat |
207 |
Q |
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| T |
41626172 |
tttgataacagcaagaaaataagattcataaaactacatagccgactctattttggatgataataatgattttgatatttagaatagaacaaagaagaat |
41626073 |
T |
|
| Q |
208 |
gaattagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaactgaagaggagctaacattgtttga |
307 |
Q |
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| T |
41626072 |
gaattagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaaagttgctatctaacaactgaagaggagctaacattgtttga |
41625973 |
T |
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| Q |
308 |
tgaatt |
313 |
Q |
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|||||| |
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| T |
41625972 |
tgaatt |
41625967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 41623311 - 41623039
Alignment:
| Q |
8 |
ccaagaatattcatctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatata |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41623311 |
ccaaaaatattcatctgattaggaaaactttgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatata |
41623212 |
T |
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| Q |
108 |
tttgataacggcaagaaaataagattcataaaactaaatagccgactcta-ttttggatgataataatgattttgatatttagaatagaacaatgaagaa |
206 |
Q |
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||||||||| ||||| ||| |||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||| |||||| |
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| T |
41623211 |
tttgataacagcaag-aaacaagattcacaaaactaaatagacgactctatttttggatgataataatgatgatgatat----aatagaacaaagaagaa |
41623117 |
T |
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| Q |
207 |
tgaattagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaact |
284 |
Q |
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| T |
41623116 |
tgaattagagtaaaaatattgtagacactagtgaatataacttcggacaaacctaggaaaagttgctatccaacaact |
41623039 |
T |
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