View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_25 (Length: 309)
Name: NF13564_low_25
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 23831230 - 23830946
Alignment:
| Q |
11 |
cagagaggcgatatctatgaagcgctgacacagacacaaa-ttggtactaacatctacacactaataataatttaagaaaattgaagacatgaaatataa |
109 |
Q |
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| T |
23831230 |
cagaggggcgatatctatgaagcgctgacacagacacaaaattgggactaacacctacacactaataataatttaagaaaattgaagacatggaatataa |
23831131 |
T |
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| Q |
110 |
tcacatgtatccatatcgaacatcagcatgtgttggacacctgacacgtcttcaatgtaaagtgtcactacatgaagcaagatattatgtcagaagagta |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23831130 |
tcacatgtatccatatcgaacatcaacatgtgttggacacctgacacgtcttcaatgtaaagtgtcactacatgaagcaagatattatgtcagaagagta |
23831031 |
T |
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| Q |
210 |
taacggtgttaaaagagttgagcaacttgactataagtttggatgtattagtaaagacgcgtatgaaaggtaaaggggacgaagg |
294 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23831030 |
taacagtgttaaaagagttgagcaacttgactataagtttggatgtattagtaaagacgtgtatgaaaggtaaaggggacgaagg |
23830946 |
T |
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