View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13564_low_26 (Length: 302)
Name: NF13564_low_26
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 40518017 - 40518287
Alignment:
| Q |
17 |
attaattcctccttaatactataatttacgaaataggatatgctctcctgcatctataaatactaatatctcgagttggatagagttataatataccatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40518017 |
attaattcctccttaatactataatttacgaaataggatatgctctcttgcatctataaatactaatatctcgagttggatagagttataatatacgatg |
40518116 |
T |
|
| Q |
117 |
aaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccgaactatcttatacaattgaaaattaaataatctaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518117 |
aaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccgaactatcttatacaattgaaaattaaataatctaa |
40518216 |
T |
|
| Q |
217 |
cgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttctcccttgctagtttga |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40518217 |
tgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttttcccttgctagtttga |
40518287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University