View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_27 (Length: 286)
Name: NF13564_low_27
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 33391151 - 33391403
Alignment:
| Q |
18 |
ttaagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagg |
117 |
Q |
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| T |
33391151 |
ttaaggaagtgatttttacttccaaagcacacataaacaattga---gttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagg |
33391247 |
T |
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| Q |
118 |
gttcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagc |
217 |
Q |
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| T |
33391248 |
gttcttttctgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattctttttttccaagaacctctctataataatcagc |
33391347 |
T |
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| Q |
218 |
ataaacaccatcaagctcatagaagctattgacaataacgccataactcctcgcct |
273 |
Q |
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| T |
33391348 |
ataaacaccatcaagctcatagaagctattgacaataacgccataactcctcgcct |
33391403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18989353 - 18989105
Alignment:
| Q |
18 |
ttaagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagg |
117 |
Q |
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| T |
18989353 |
ttaaggaagtgatttgtacttccaaagcacacataaacaa---ctaagttgatatcttttgtgtcaagccactttagacacttgtgtttattgatagagg |
18989257 |
T |
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| Q |
118 |
gttcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagc |
217 |
Q |
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| T |
18989256 |
gttcttttccgcggtatgatgtatccatatctctgttgtaaactgagaatagacctatatgccattctttttttccaataaactctctataataatcagc |
18989157 |
T |
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| Q |
218 |
ataaacaccatcaagctcatagaagctattgacaataacgccataactcctc |
269 |
Q |
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| T |
18989156 |
ataaacaccgtcaagctcatagaagctattgataataacgccataactcctc |
18989105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 19001785 - 19001539
Alignment:
| Q |
18 |
ttaagaaagtgatttttacttccaaagcacacataaacaattgatgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagg |
117 |
Q |
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| T |
19001785 |
ttaaggaagtgatttgtacttccaaagaacacataaacaactga---gttgatatctt--gtgtcaagccactttagacactcatgtttattgatagagg |
19001691 |
T |
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| Q |
118 |
gttcttttatgcagtatgatgtatccatatctctgttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagc |
217 |
Q |
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| T |
19001690 |
gttcttttccgcggtatgatgtatccatatctctgttgaaaactgagaatggacctatatcccattcattttgtccaagaacctctctataataatcagc |
19001591 |
T |
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| Q |
218 |
ataaacaccatcaagctcatagaagctattgacaataacgccataactcctc |
269 |
Q |
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| T |
19001590 |
ataagcaccgtcaagctcatagaagctattgacaataatgccataactcctc |
19001539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 269
Target Start/End: Original strand, 27688959 - 27689175
Alignment:
| Q |
62 |
tgagttgatatcttttgtgtcaagccactttagacactcatgtttattgatagagggttcttttatgcagtatgatg-tat--------ccatatctctg |
152 |
Q |
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| T |
27688959 |
tgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttcttttcctcggtacgatggtatttcttcctccttatttcta |
27689058 |
T |
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| Q |
153 |
ttgtaaactgagaatggacctatatgccattcnnnnnnnccaagaatctctctataataatcagcataaacaccatcaagctcatagaagctattgacaa |
252 |
Q |
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| T |
27689059 |
ttgtgaattgagaatggacctatatgccattcttttattccaagtacctctctataataatctgcataaacattctcgagctcatagaagctattaacaa |
27689158 |
T |
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| Q |
253 |
taacgccataactcctc |
269 |
Q |
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| T |
27689159 |
taactccgtaactcctc |
27689175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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