View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_31 (Length: 237)
Name: NF13564_low_31
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40102896 - 40102676
Alignment:
| Q |
1 |
ctaatttaatctaatgcaattgtattagatttaattttcattttgagctatattatattacttaacacaaagtatatatccttgtgagtgaaatcataga |
100 |
Q |
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| T |
40102896 |
ctaatttaatccaatgcaattgtattagatttaattttcattttgagctatattatattacttaacacaaagtatatatccttgtgagtgaaatcataga |
40102797 |
T |
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| Q |
101 |
caatgttatatttgtcttttgtgtttaaggagaattaacatacgcattgtgtaagaagagtatctcataagaggagtcattatcactcctgggtggacag |
200 |
Q |
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| T |
40102796 |
caatgttatatttgtcttttgtgtttaaggagaattaacatacgcattgtgtaagaagagtatctcataagaggagtcattatcactcctgggtggacag |
40102697 |
T |
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| Q |
201 |
agttgactgtgatgttcactc |
221 |
Q |
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| T |
40102696 |
agttgactgtgatgttcactc |
40102676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 29517576 - 29517636
Alignment:
| Q |
153 |
aagaagagtatctcataagaggagtcattatcactcctgggtggacagagttgactgtgat |
213 |
Q |
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| T |
29517576 |
aagaagagtgtctcataagaggagtcattattactcctgggtgtactgagttggctgtgat |
29517636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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