View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_33 (Length: 236)
Name: NF13564_low_33
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 3447326 - 3447552
Alignment:
| Q |
10 |
atcatcaagttcaatttacaaaattcacataaaggaacctatttgttctttatttcacacacaaaaggaccaactcagcaattcaaagcaaccaaatcca |
109 |
Q |
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| T |
3447326 |
atcatcaagttcaatttacaaaattcacataaaggaacctttttgttctttatttcacacataaaaggaccaactcagcaattcaaagcaaccaaatcca |
3447425 |
T |
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| Q |
110 |
agacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacagtttaggacataaagtgcactcaaaacaatcaaaattca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447426 |
agacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacagtttaggacataaagtgcactcaaaacaatcaaaattca |
3447525 |
T |
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| Q |
210 |
gttgttatatcaaagcatcaagctacc |
236 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3447526 |
gttgttatatcaaagcatcaagctacc |
3447552 |
T |
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