View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_4 (Length: 781)
Name: NF13564_low_4
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_4 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 398 - 773
Target Start/End: Complemental strand, 63668 - 63275
Alignment:
| Q |
398 |
aggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagacaaagataagaggtgc |
496 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63668 |
aggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagacaaagataagaggtgc |
63569 |
T |
|
| Q |
497 |
gaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgacaaa |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63568 |
gaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgacaaa |
63469 |
T |
|
| Q |
597 |
gactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccc----------cataacatagc-------tctatta |
679 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
63468 |
gactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagctgatagatctatta |
63369 |
T |
|
| Q |
680 |
atgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctgtctctgct |
773 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63368 |
atgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctgtctctgct |
63275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 64049 - 63716
Alignment:
| Q |
18 |
aaaatagaagtcatttaagattttttagaaatctatttagttaaaagtgtccaaattgcatcgaaaaacttctt-aagtctatttaagtaatatgaatat |
116 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
64049 |
aaaatagaagtcatctaaggttttttagaaatctatttagttaaaagtgtccaaattgcatcgaaaaacttctttaagtctatttaagtaatatgaatat |
63950 |
T |
|
| Q |
117 |
taacccacttgagttgacatgatgtttagggtttttggcatgaattgttatgtcaannnnnnnnnnnnnnnnnnacattaacattgaattggtttatttt |
216 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
63949 |
taacccacttgagttgatctgatgtttagggttttaagcatgaattgttatgtcaattttttccttcattttttacattaacattgaattggtttatttt |
63850 |
T |
|
| Q |
217 |
ggatctatttgctaggtatatagatgacaaaactcgtggctttgccttttcatgtctagatatagatataggatcatgcatcaactagttgatggatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
63849 |
ggatctatttgctaggtatatagatgacaaaactcgtggctttgccttttcatgtctagatatagatataggatcatgcatcaacaagttgatggatgaa |
63750 |
T |
|
| Q |
317 |
atggaaagcagtcttctcttctccaccgaatacg |
350 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |
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| T |
63749 |
atggaaagtagtcttctcttctccaccgaatacg |
63716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 398 - 773
Target Start/End: Original strand, 40909426 - 40909819
Alignment:
| Q |
398 |
aggtagcatagcaatattgtgatcagtcacaaatccctagggtgagtgtattctt-gttttcctttttctgaaaaatgtttagacaaagataagaggtgc |
496 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909426 |
aggtagcatagccatattgtgatcagtcacaaatccctagggggagtgtattctttgttttcctttttctgaaaaatgtttagacaaagataagaggtgc |
40909525 |
T |
|
| Q |
497 |
gaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgacaaa |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909526 |
gaaagttgtttggaaaggagtgtttgtgcttggcatcttttaccaacaaacgaaggaacatggtcgtttgttggataggatagaaaaagaacacgacaaa |
40909625 |
T |
|
| Q |
597 |
gactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtcc----------ccataacatagc-------tctatta |
679 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
40909626 |
gactgctacatatgcaatactttgtattcattgtcattggcttgactttgacatttttaggtccccataccataccataacatagctgatagatctatta |
40909725 |
T |
|
| Q |
680 |
atgccttgtgctacggtggtaaccctccctgatcatattccattattcaatggggttattacacgtgtcatcccactaggactctgtctctgct |
773 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909726 |
atgccttgtgctacggtggtaaccctccctgatcatattcctttattcaatggggttattacacgtgtcatcccactaggactctgtctctgct |
40909819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 40909045 - 40909378
Alignment:
| Q |
18 |
aaaatagaagtcatttaagattttttagaaatctatttagttaaaagtgtccaaattgcatcgaaaaacttctt-aagtctatttaagtaatatgaatat |
116 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40909045 |
aaaatagaagtcatctaaggttttttagaaatctatttagttaaaagtgtccaaattgcatcgaaaaacttctttaagtctatttaagtaatatgaatat |
40909144 |
T |
|
| Q |
117 |
taacccacttgagttgacatgatgtttagggtttttggcatgaattgttatgtcaannnnnnnnnnnnnnnnnnacattaacattgaattggtttatttt |
216 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40909145 |
taacccacttgagttgatctgatgtttagggttttaagcatgaattgttatgtcaattttttccttcattttttacattaacattgaattggtttatttt |
40909244 |
T |
|
| Q |
217 |
ggatctatttgctaggtatatagatgacaaaactcgtggctttgccttttcatgtctagatatagatataggatcatgcatcaactagttgatggatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40909245 |
ggatctatttgctaggtatatagatgacaaaactcgtggctttgccttttcatgtctagatatagatataggatcatgcatcaacaagttgatggatgaa |
40909344 |
T |
|
| Q |
317 |
atggaaagcagtcttctcttctccaccgaatacg |
350 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
40909345 |
atggaaagtagtcttctcttctccaccgaatacg |
40909378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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