View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13564_low_5 (Length: 666)
Name: NF13564_low_5
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_5 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 49 - 650
Target Start/End: Original strand, 1046079 - 1046676
Alignment:
| Q |
49 |
caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1046079 |
caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt |
1046178 |
T |
|
| Q |
149 |
tgtattttttgatatgttgagagtaaactttgtcatgaccataataaaactcttttgcccggtgcgttgcacgggtcaaagactaattaataacatacaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
1046179 |
tgtattttttgatatgttgagagtaaactttgtcatcaccataataaaactcttttgcccggtgcattgcacgggtcaaagactaat----aacatacaa |
1046274 |
T |
|
| Q |
249 |
acacatagtttagtcccaagtcaatttaacatgnnnnnnnnnnnnnnnaagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
1046275 |
acacatagtttagtcccaagtcaatttaacatgttttttttcttttttaagggatgtcaatttagcatatctaaacacacaaacatccaacgtgtgtctg |
1046374 |
T |
|
| Q |
349 |
catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatcccttgttcttttttaaattatctaccgcaattgat |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1046375 |
catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatctcttgttcttttttaaattatctaccgcaattgat |
1046474 |
T |
|
| Q |
449 |
acaatcacccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatc |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046475 |
acaatcacccaatttcaatctcttgatgatggcaacaccttggtttctaatgacggaacctttgagttaggctttttcacaccaggtagttcaacaaatc |
1046574 |
T |
|
| Q |
549 |
gctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccat |
648 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1046575 |
gctatgtgggaatatggtacaaaaacatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacaattccaactcaaccat |
1046674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 297 - 650
Target Start/End: Original strand, 1071133 - 1071489
Alignment:
| Q |
297 |
aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt |
396 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
1071133 |
aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcattcaatgcaaaatggccaatattcttcctatgatatt |
1071232 |
T |
|
| Q |
397 |
gtttgttattcttaatccc---ttgttcttttttaaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatggcaacaccttggtt |
493 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1071233 |
gtttgttattcttaatctcatattgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatggcaacactttggtt |
1071332 |
T |
|
| Q |
494 |
tctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatag |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071333 |
tctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatag |
1071432 |
T |
|
| Q |
594 |
tttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgt |
650 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
1071433 |
tttgggttgcaaaccgtgatgatccaatcaaggacaacaactccaactcaaccatgt |
1071489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 297 - 650
Target Start/End: Original strand, 1086797 - 1087150
Alignment:
| Q |
297 |
aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt |
396 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1086797 |
aaggaaagtcaatttagcatatataaacgcacaaacataaaatgtgtgtctgcctcaaactcaatcaatgcaaaatgaccaatattcttcctatgatatt |
1086896 |
T |
|
| Q |
397 |
gtttgttattcttaatccc---ttgttcttttttaaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatggcaacaccttggtt |
493 |
Q |
| |
|
|||||||||||||| || | |||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
1086897 |
gtttgttattcttagtctcctgttgttcttctttcaattatctacttcaattgataccatcacccaatttcaatctcttcatgatggcaacactttggtt |
1086996 |
T |
|
| Q |
494 |
tctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatag |
593 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
1086997 |
tctaatgatggaacctttgagttaggatttttcacaccaggtagttccacaaatcgctatgtgggaatatggtacaaaaatatgcctaa---tagaatag |
1087093 |
T |
|
| Q |
594 |
tttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgt |
650 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1087094 |
tttgggttgcaaaccgtgatgatccaatcaaagacaacacctccaactcaaccatgt |
1087150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 429 - 650
Target Start/End: Original strand, 1103485 - 1103706
Alignment:
| Q |
429 |
aattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcac |
528 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103485 |
aattatcaaccgcaattgatacaataacccaattccaatctcttgatgatggtaacactttggtttctaatgatggaacctttgagttaggctttttcac |
1103584 |
T |
|
| Q |
529 |
accaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagac |
628 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1103585 |
accaggtagttcaacaaatcgctacgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagac |
1103684 |
T |
|
| Q |
629 |
aacaattccaactcaaccatgt |
650 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
1103685 |
aacacctccaactcaaccatgt |
1103706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 27265268 - 27265173
Alignment:
| Q |
8 |
tcgaagaatatcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctccataat |
103 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
27265268 |
tcgaagtaaatcccaagcatcacgatgacgtgcacgttcagcaaaaccataataacaagttaatctctaatcactagcttctctatcctccataat |
27265173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 43321563 - 43321645
Alignment:
| Q |
17 |
atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
43321563 |
atcccaagcatcacgacgacgggcacgttcaggaaagccataataacaagttaatctccagtcaccagcttctctatcctcca |
43321645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 7123836 - 7123763
Alignment:
| Q |
21 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatc |
94 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||| |||||||||| |||| |
|
|
| T |
7123836 |
caagcatcacgacgacgagcacgttcaggaaagccataataacaagtcaatctccaatcaccagcttctttatc |
7123763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 23551608 - 23551703
Alignment:
| Q |
484 |
caccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatccc |
579 |
Q |
| |
|
||||||| |||| || ||||||||||| || ||||| || |||| ||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
23551608 |
caccttgatttccaaagatggaaccttcgaattaggtttcttcagtccaggtaattccccaaaccgctatgtcggaatttggtacaaaaacatccc |
23551703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 24602321 - 24602247
Alignment:
| Q |
21 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcc |
95 |
Q |
| |
|
|||||||| ||| ||| ||||||||| ||||||||||||| | ||||||||||||| || ||| ||||||||| |
|
|
| T |
24602321 |
caagcatcgcgatgacaggcacgttcaggaaagccataataaaaagttaatctccaatcacgagcgtctctatcc |
24602247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 629
Target Start/End: Complemental strand, 10607 - 10453
Alignment:
| Q |
475 |
tgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaat |
574 |
Q |
| |
|
|||||| | ||||||||||||||| | |||| ||||||||||| || |||| ||||||||||| || || |||||||| ||||| |||||||||||| |
|
|
| T |
10607 |
tgatggaagcaccttggtttctaagggtggagtatttgagttaggtttcttcaatccaggtagttccacgaaccgctatgttggaatttggtacaaaaat |
10508 |
T |
|
| Q |
575 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagaca |
629 |
Q |
| |
|
||||| |||||| | ||||||||||| || ||||| ||||||||| |||||| |
|
|
| T |
10507 |
atcccggttagaagagttgtttgggttgccaatcgtgacaatccaatcaaagaca |
10453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 628
Target Start/End: Complemental strand, 22692462 - 22692326
Alignment:
| Q |
492 |
tttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaat |
591 |
Q |
| |
|
||||||| ||||||| ||||||||| || ||||||| |||||||||||| |||| |||||||| ||| | |||||||||||||| ||| |||||| | |
|
|
| T |
22692462 |
tttctaaagatggaagctttgagttgggttttttcagtccaggtagttcatcaaaccgctatgtcggactttggtacaaaaatattccagttagaagagt |
22692363 |
T |
|
| Q |
592 |
agtttgggttgcaaaccgtgataatccaatcgaagac |
628 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
22692362 |
ggtttgggttctcaaccgtgataatccgatcaaagac |
22692326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 579
Target Start/End: Original strand, 28426034 - 28426138
Alignment:
| Q |
475 |
tgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaat |
574 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||||||||| | || || |||| ||| |||| || ||| |||||||| |||||||||||||||||| |
|
|
| T |
28426034 |
tgatggcagcactttggtctctaaggatggaacctttgagatgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaat |
28426133 |
T |
|
| Q |
575 |
atccc |
579 |
Q |
| |
|
||||| |
|
|
| T |
28426134 |
atccc |
28426138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 579
Target Start/End: Original strand, 28417503 - 28417605
Alignment:
| Q |
477 |
atggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatat |
576 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||||||||||||| | || || |||| ||| |||| || ||| |||||||| |||||||||||||||||||| |
|
|
| T |
28417503 |
atggcagcactttggtctctaaggatggaacctttgagatgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaatat |
28417602 |
T |
|
| Q |
577 |
ccc |
579 |
Q |
| |
|
||| |
|
|
| T |
28417603 |
ccc |
28417605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 51263020 - 51263098
Alignment:
| Q |
21 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
99 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
51263020 |
caagcatcacaacgacgaacacgttcaagaaagccataataacaagttaatctccaatcaccagcttctttatcctcca |
51263098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 48950460 - 48950542
Alignment:
| Q |
17 |
atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
99 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| ||||| ||||||| | ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48950460 |
atcccaagcatcacgactacgagcacgttcaggaaagcgataataataagttaatctccaatcaccagcttctttatcctcca |
48950542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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