View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_6 (Length: 652)
Name: NF13564_low_6
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 164 - 638
Target Start/End: Complemental strand, 38891140 - 38890662
Alignment:
| Q |
164 |
ataggatatctttttaaatctcttttcgtattgtttaaaaacgaccacgtttcatcataaatagtatactttgctgaaattaaatcactccaaaatttta |
263 |
Q |
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| T |
38891140 |
ataggatatctttttgtatcttttttcgtattgtttaaaaacgaccacgttccatcataaatagtatactttgttgaaattaaatcactccaaaatttta |
38891041 |
T |
|
| Q |
264 |
tacatgtttgaaatcaaattgaaaaacatgatgcgaaatccatgttggttttctcatgaaatttttaatctacaacacacctaaaattaatgtcaaccga |
363 |
Q |
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| T |
38891040 |
tacatgtttgaaatcaaattgaaaaacatgatgcgaaatccatgttggttttctcatgaaatttttaatctacaacacacctaaaattaatgtcaaccga |
38890941 |
T |
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| Q |
364 |
tgttcgggtactactaataaacaacctgtgcaatcgtggatgtatcagcacaccattatcatgtatttcccacaaaccaaaattaactattgattctaat |
463 |
Q |
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| T |
38890940 |
tgttcgggt---actaataaacaacctgtgcaatcgtggatgtatcagcacaccattatcatgtatttcccacaaaccaaaattaactattgattctaat |
38890844 |
T |
|
| Q |
464 |
tcatgtattccaaaattcacaacaaagcttgacattgcacttgtattcatattgtaaatcacgcatcagacaaacttt-------catgtgagtcacaat |
556 |
Q |
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| T |
38890843 |
tcatgtattccaaaattcacaacaaagcttgacattgcacttgtattcatattgtaaatcatgcatcaaacaaactttaaaaaaagatgtgagtcacaat |
38890744 |
T |
|
| Q |
557 |
tgtcgtttaaatattcgtgtttattattggtcttccttttccatactatctcagttgataaagataatgcctgaaatatata |
638 |
Q |
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| T |
38890743 |
tgtcgtttaaatactcgtgtttattattggtcttccttttccatgatatctcagttggtaaagacaatacatgatatatata |
38890662 |
T |
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