View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13564_low_8 (Length: 575)
Name: NF13564_low_8
Description: NF13564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13564_low_8 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 17 - 563
Target Start/End: Complemental strand, 24495144 - 24494598
Alignment:
| Q |
17 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
24495144 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgatagatgatctatagtggaaacatgttgaacccgaatctttt |
24495045 |
T |
|
| Q |
117 |
tatttctcacatgatctctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24495044 |
tatttctcacatgatctctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagatt |
24494945 |
T |
|
| Q |
217 |
gtcacagtagatggtaggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494944 |
gtcacagtagatggtaggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctcta |
24494845 |
T |
|
| Q |
317 |
tattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494844 |
tattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatg |
24494745 |
T |
|
| Q |
417 |
tataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggcttt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494744 |
tataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggcttt |
24494645 |
T |
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| Q |
517 |
gagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatg |
563 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
24494644 |
gagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatg |
24494598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 86609 - 86237
Alignment:
| Q |
17 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
86609 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccgaatctttt |
86510 |
T |
|
| Q |
117 |
tatttctcacatgatctctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagatt |
216 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
86509 |
tatttctgacatgatctctaacaaaatgaatatctatggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagatt |
86410 |
T |
|
| Q |
217 |
gtcacagtagatggtaggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctcta |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
86409 |
gtcacagtagatggtaggaatagttggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctg |
86310 |
T |
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| Q |
317 |
tattcagcttcagtggatgatcttgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccat |
389 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
86309 |
tattcagcttcagtggatgatcttgcaacaaatttttgtttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 385 - 563
Target Start/End: Complemental strand, 94126 - 93948
Alignment:
| Q |
385 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
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| Q |
485 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatg |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatg |
93948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 18556848 - 18557131
Alignment:
| Q |
17 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556848 |
atcttgaaacgaagatcttgatgacgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttt |
18556947 |
T |
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| Q |
117 |
tatttctcacatgatctctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagatt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18556948 |
tatttctgacatgatctctgacaaaatgaatatctatggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagatt |
18557047 |
T |
|
| Q |
217 |
gtcacagtagatggtaggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18557048 |
gtcacagtagatggtaggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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