View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13565_high_10 (Length: 462)
Name: NF13565_high_10
Description: NF13565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13565_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 48749335 - 48749802
Alignment:
| Q |
1 |
tatggctggtgatcagaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaacgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48749335 |
tatggctggtgatcagaacccaacgtttttagctacacctgtttttccaaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaacgc |
48749434 |
T |
|
| Q |
101 |
gaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtgagtcagtaacataatttgtttttattttctt-------- |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48749435 |
gaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaacagaagaacagagtcagtcagtaacataatttgtttttattttcttaattttat |
48749534 |
T |
|
| Q |
193 |
----------ccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctgactgaaattaataatttgttataatctttggtgttatga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
48749535 |
ctattttcttccatgattcgggaagtgtaaatttaagatgagataaatttgttataatctga----aattaataatttcttataatctttggtgttatga |
48749630 |
T |
|
| Q |
283 |
cttatgaatgattttgagcttgagaaaaaaggaagtaattatggttgatgagtagtagtgagaagcaagtaaacagaaaagtgtatgactgcgtaacgaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48749631 |
cttatgaatgattttgagcttgagaaaaaaggaagtaattatggttgatgagtagtagtgagaagcaagtaaacagaacagtgtatgactgcgtaacgaa |
48749730 |
T |
|
| Q |
383 |
atttgtgtgcttaaaataaaaatgaaatatagatgacgtaacc-gaataataaagacaaattataccgtctctg |
455 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48749731 |
atttgtgtgcttaaaataaaaatgaa--atagatgacgtaaccggaataataaagacaaattataccgtctctg |
48749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University